RetrogeneDB ID:

retro_ttru_874

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_433:247007..247180(-)
Located in intron of:ENSTTRG00000013161
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:LSM5
Ensembl ID:ENSTTRG00000004237
Aliases:None
Description:LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17162]


Retrocopy-Parental alignment summary:






>retro_ttru_874
GAGAAGGATATGGTTGGCACACTTCTAGGATTTAATGAATGTGTCAGTATGTTACTAGACAATGCCAATGAATTTTAATC
TCCATGGAGAGAAGAATAATAATCAATTTAAAATATATTTGGCTAAGTGGAAATAAAACAATGCTGGTTCCTGGGAAATA
AGGATCTGAGGTG

ORF - retro_ttru_874 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 51.67 %
Parental protein coverage: 64.84 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalDKEIVGTLLGFDDFVNMVLEDVTEF-EITPEGRRITKLDQILLNGNNITMLVPGGEGPEV
.K..VGTLLGF...V.M.L....EF..I..E.R.I..L..I.L.GN..TMLVPG..G.EV
RetrocopyEKDMVGTLLGFNECVSMLLDNANEF<LISMERRIIINLKYIWLSGNK-TMLVPGK*GSEV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_874 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_874 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 48 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000067001 retrocopy
Bos taurus ENSBTAG000000023323 retrocopies
Callithrix jacchus ENSCJAG000000091853 retrocopies
Cavia porcellus ENSCPOG000000104211 retrocopy
Equus caballus ENSECAG000000184451 retrocopy
Echinops telfairi ENSETEG000000180688 retrocopies
Loxodonta africana ENSLAFG000000295793 retrocopies
Mus musculus ENSMUSG000000916254 retrocopies
Nomascus leucogenys ENSNLEG000000152681 retrocopy
Otolemur garnettii ENSOGAG000000138923 retrocopies
Pongo abelii ENSPPYG000000176611 retrocopy
Pan troglodytes ENSPTRG000000190571 retrocopy
Pteropus vampyrus ENSPVAG000000097861 retrocopy
Rattus norvegicus ENSRNOG000000421263 retrocopies
Tupaia belangeri ENSTBEG0000000487611 retrocopies
Tursiops truncatus ENSTTRG00000004237 3 retrocopies
retro_ttru_1521, retro_ttru_1585, retro_ttru_874 ,



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