Parental gene:

LSM5, ENSCPOG00000010421

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_30:22875318..22879278(+)


>ENSCPOG00000010421
ATGGCAGCTAACGCGACCACCAACCCGTCTCAGCTGCTGCCGTTAGAGCTTGTGGACAAATGTATAGGATCAAGAATTCA
CATCGTAATGAAGAGTGATAAGGAAATTGTTGGCACTCTTCTAGGATTTGATGACTTTGTCAATATGGTGCTAGAAGATG
TCACTGAATTTGAGATTACACCAGAAGGAAGAAGGATTACTAAATTAGATCAGATCTTGCTAAATGGAAATAATATAACC
ATGTTAGTTCCTGGAGGAGAAGGACCAGAAGTA

Library Parental gene expression (RPM)
SRP017611_liver 7 .92 RPM
SRP017611_kidney 10 .89 RPM
SRP017611_brain 4 .66 RPM
SRP040447_lung 5 .75 RPM
SRP040447_skeletal_muscle 5 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006700 ortholog_one2one 1 retrogene
retro_amel_453,
Callithrix jacchus ENSCJAG00000009185 ortholog_one2one 3 retrogenes
retro_cjac_1883, retro_cjac_2760, retro_cjac_3068,
Equus caballus ENSECAG00000018445 ortholog_one2one 1 retrogene
retro_ecab_809,
Echinops telfairi ENSETEG00000018068 possible_ortholog 8 retrogenes
retro_etel_1305, retro_etel_1502, retro_etel_1907, retro_etel_198, retro_etel_2054, retro_etel_2193, retro_etel_454, retro_etel_964,
Mus musculus ENSMUSG00000091625 ortholog_one2one 4 retrogenes
retro_mmus_1568, retro_mmus_423, retro_mmus_826, retro_mmus_837,
Nomascus leucogenys ENSNLEG00000015268 ortholog_one2one 1 retrogene
retro_nleu_179,
Otolemur garnettii ENSOGAG00000013892 ortholog_one2one 3 retrogenes
retro_ogar_2727, retro_ogar_3062, retro_ogar_881,
Pongo abelii ENSPPYG00000017661 ortholog_one2one 1 retrogene
retro_pabe_3449,
Pan troglodytes ENSPTRG00000019057 ortholog_one2one 1 retrogene
retro_ptro_2862,
Pteropus vampyrus ENSPVAG00000009786 ortholog_one2one 1 retrogene
retro_pvam_1410,
Rattus norvegicus ENSRNOG00000042126 ortholog_one2one 3 retrogenes
retro_rnor_1171, retro_rnor_567, retro_rnor_694,
Tupaia belangeri ENSTBEG00000004876 ortholog_one2one 11 retrogenes
retro_tbel_1043, retro_tbel_1107, retro_tbel_1217, retro_tbel_1323, retro_tbel_1549, retro_tbel_1865, retro_tbel_2203, retro_tbel_2908, retro_tbel_2956, retro_tbel_3330, retro_tbel_4335,
Tursiops truncatus ENSTTRG00000004237 ortholog_one2one 3 retrogenes
retro_ttru_1521, retro_ttru_1585, retro_ttru_874,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_607 59.02 67.03
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Download FASTA sequences of all ENSCPOG00000010421 retrocopies