RetrogeneDB ID: | retro_vpac_78 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_160:1617916..1618335(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARF1 | ||
Ensembl ID: | ENSVPAG00000003224 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor 1 [Source:HGNC Symbol;Acc:652] |
Percent Identity: | 75.18 % |
Parental protein coverage: | 77.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ |
G.IFANLFK..FGKK..RILM.GLDA.GKT.ILYKLKLG..V.TIPTIGF..ET.E.KN..FT.W..GGQ | |
Retrocopy | GIIFANLFKVFFGKKATRILMMGLDAVGKTIILYKLKLGDTVATIPTIGFIMETAEHKNTGFTMWHLGGQ |
Parental | DKIRPLWRHYFQ-NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT |
D.IRP.W.HYFQ...QG.IFVVDSNDRE.V.EA.EEL.RMLAEDELRDA.L.VFAN.QDLPNAMNAAEI. | |
Retrocopy | DRIRPPWYHYFQ<GSQGFIFVVDSNDRECVKEALEELTRMLAEDELRDAILIVFANRQDLPNAMNAAEIM |
Parental | D |
D | |
Retrocopy | D |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |