Parental gene:

ARF1, ENSPPYG00000000148

Aliases:None
Description:ADP-ribosylation factor 1 [Source:HGNC Symbol;Acc:652]
Organism:Orangutan (Pongo abelii)
Coordinates:1:21508851..21525540(-)


>ENSPPYG00000000148
ATGGGGAACATCTTCGCCAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGAAATGCGCATCCTCATGGTGGGCTTGGATGC
TGCAGGGAAGACCACGATCCTGTACAAGCTTAAGCTGGGTGAGATCGTGACCACCATTCCCACCATAGGCTTCAACGTGG
AAACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGACGTGGGTGGCCAGGACAAGATCCGGCCCCTGTGGCGCCAC
TATTTCCAGAACACACAAGGCCTGATCTTCGTGGTGGACAGCAATGACAGAGAGCGCGTGAACGAGGCCCGTGAGGAGCT
CATGAGGATGCTGGCCGAGGACGAGCTCCGGGATGCTGTCCTCCTGGTGTTCGCCAACAAGCAGGACCTCCCCAACGCCA
TGAATGCGGCTGAGATCACAGACAAGCTGGGGCTGCACTCCCTACGCCACAGGAACTGGTACATTCAGGCCACCTGCGCC
ACCAGCGGCGACGGGCTCTATGAAGGACTGGACTGGCTGTCCAATCAGCTCCGGAACCAGAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 233 .44 RPM
SRP007412_cerebellum 131 .94 RPM
SRP007412_heart 125 .02 RPM
SRP007412_kidney 212 .24 RPM
SRP007412_liver 246 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007725 ortholog_one2one 2 retrogenes
retro_btau_1257, retro_btau_1390,
Callithrix jacchus ENSCJAG00000016671 ortholog_one2one 10 retrogenes
retro_cjac_1295, retro_cjac_1691, retro_cjac_1719, retro_cjac_2189, retro_cjac_2896, retro_cjac_300, retro_cjac_3181, retro_cjac_3311, retro_cjac_3335, retro_cjac_390,
Ciona savignyi ENSCSAVG00000007011 possible_ortholog 1 retrogene
retro_csav_2,
Ficedula albicollis ENSFALG00000001088 ortholog_one2one 1 retrogene
retro_falb_2,
Gallus gallus ENSGALG00000005393 ortholog_one2one 1 retrogene
retro_ggal_7,
Latimeria chalumnae ENSLACG00000019009 possible_ortholog 1 retrogene
retro_lcha_10,
Myotis lucifugus ENSMLUG00000007020 possible_ortholog 6 retrogenes
retro_mluc_1631, retro_mluc_242, retro_mluc_2605, retro_mluc_428, retro_mluc_511, retro_mluc_876,
Macaca mulatta ENSMMUG00000002792 possible_ortholog 3 retrogenes
retro_mmul_237, retro_mmul_541, retro_mmul_810,
Oryctolagus cuniculus ENSOCUG00000023645 possible_ortholog 2 retrogenes
retro_ocun_1137, retro_ocun_247,
Otolemur garnettii ENSOGAG00000010974 ortholog_one2one 4 retrogenes
retro_ogar_2431, retro_ogar_295, retro_ogar_3353, retro_ogar_974,
Procavia capensis ENSPCAG00000014202 possible_ortholog 2 retrogenes
retro_pcap_15, retro_pcap_23,
Pongo abelii ENSPPYG00000004473 within_species_paralog 1 retrogene
retro_pabe_126,
Pongo abelii ENSPPYG00000013694 other_paralog 1 retrogene
retro_pabe_343,
Pongo abelii ENSPPYG00000013768 within_species_paralog 3 retrogenes
retro_pabe_1013, retro_pabe_1075, retro_pabe_3451,
Pelodiscus sinensis ENSPSIG00000009767 ortholog_one2one 1 retrogene
retro_psin_12,
Sarcophilus harrisii ENSSHAG00000014599 ortholog_one2one 3 retrogenes
retro_shar_106, retro_shar_462, retro_shar_725,
Ictidomys tridecemlineatus ENSSTOG00000009288 ortholog_one2one 3 retrogenes
retro_itri_1754, retro_itri_273, retro_itri_363,
Taeniopygia guttata ENSTGUG00000000233 ortholog_one2one 1 retrogene
retro_tgut_2,
Tetraodon nigroviridis ENSTNIG00000011685 possible_ortholog 1 retrogene
retro_tnig_19,
Vicugna pacos ENSVPAG00000003224 ortholog_one2one 4 retrogenes
retro_vpac_281, retro_vpac_328, retro_vpac_6, retro_vpac_78,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_849 72.28 100.00
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2. retro_pabe_965 81.11 98.90
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3. retro_pabe_3159 67.76 80.66
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Download FASTA sequences of all ENSPPYG00000000148 retrocopies