Detailed information on CNT0002612 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005984, E-value = 2e-27 (V. vinifera)
CNT0042639, E-value = 5e-28 (A. thaliana)
CNT0035385, E-value = 2e-08 (P. patens)
CNT0018989, E-value = 2e-27 (Z. mays)
CNT0022204, E-value = 2e-27 (A. trichopoda)
CNT0031477, E-value = 2e-30 (O. sativa)
CNT0009686, E-value = 8e-30 (S. tuberosum)
CNT0037993, E-value = 7e-21 (S. moellendorffii)

Expression of CNT0002612

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)161.426183.175175.4581 814.389166.46747.56744.72824.111449.73412.003707.71616.656409.9061 307.3811 313.775leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0100200300400500600700800900100011001200130014001500160017001800190020…2000

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MLLLRLRINRISCLHFCFSLCYFVCTLQPHSLMLILILDYICCNSF*

>peptide 2 (56 aa)
MFLAENNAVTAFANQQDILFAFLFLSLLLCLYIAATFSYVDFDFGLYLLQFFLGFD*

>peptide 3 (57 aa)
PFLFFLILCCFSAASARVRKRRRVLFSFRDEGQVEEEAYEEAEEEAPKDETEIQVVR*

Sequence

>CNT0002612
CCATTCCTTTTCTTCTTAATCCTCTGTTGTTTCTCAGCCGCCTCGGCTAGGGTTCGGAAACGAAGAAGGGTTCTGTTTTCTTTTCGCGATGAGGGCCAAG
TGGAAGAAGAAGCGTATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGACAGAGATCCAAGTAGTGCGTTAAACCTAGTTTGTTTCCGTTGCTTTTAC
AATTGCTTATGTTGTCAAATAGGACACCCAGTTGTTAGTGGCACTGGTCTCTCCTTTTTGATGTTTTGATACATTTTGTTGGATTTTATTTCGTCTTATG
TTCTTAGCTGAAAACAATGCTGTTACTGCGTTTGCGAATCAACAGGATATCTTGTTTGCATTTCTGTTTCTCTCTTTGCTACTTTGTCTGTACATTGCAG
CCACATTCTCTTATGTTGATTTTGATTTTGGATTATATCTGCTGCAATTCTTTTTAGGGTTTGATTAAATTATCCCGATGTTAGATCTTAAGGCTTAATA
CTTAAATTCTCTGATGGCAA