Parental gene:

GTF2F2, ENSACAG00000028333

Aliases:None
Description:general transcription factor IIF, polypeptide 2, 30kDa [Source:HGNC Symbol;Acc:4653]
Organism:Anole lizard (Anolis carolinensis)
Coordinates:GL343395.1:657754..747269(+)


>ENSACAG00000028333
ATGAGCGAGAAGGGGGAGCTGGATCTGACCGGGGCCAAGCAGAACACGGGCATGTGGCTAGTCAAGGTATCTTTCACTCT
GAATGAAGATCTTGCAAACATTGATGATATTGGTGGAAAGCCAACTTCCATCAGCGCACCCAGAGAACATCCTTTTCTTT
TACAAAGTGTGGGAGGACAGACATTAACTGTGTTTACAGAGAGCGCCTTAGAGTGCCAGGCAGATGAAAAATCAGAGAGC
AGCAATACTGAAAAACTATCACTGGAAGGAATAGTGGTCCAGCGTGCAGAATGCCGGCCTGCAGCCAGTGAAAACTATAT
GAAGTTGAAAAGGCTGCAAATTGAAGAATCTTCCAAACCTGTAAGCTGGACAATGCAGTTGGAGAAAGCTGTAACCACAA
ACTACAAGCCTGTGGCAAATCATCAGTATAATATTGAGTATGAAAAGAAGAAGAAAGAAGATGGAAAGCGAGCGCGGGCT
GAAAAGCAACAAGTGCTGGACATGCTTTTTTCAGCTTTTGAAAAACATCAGTATTATAACATTAAAGATTTAGTTGATAT
AACAAAACAGCCAGTGAGCTACTTGAAAGAAATTTTAAGAGAAATTGGTATCTACAATGTTAAAGGGACGCACAAAAACA
CCTGGGAACTTAAACCAGAATACCGACATTATCAAGGTGAAGATAAGAGTGATTAA

Library Parental gene expression (RPM)
SRP009831_adrenal 18 .51 RPM
SRP009831_brain 43 .74 RPM
SRP009831_dewlap 46 .57 RPM
SRP009831_embryo 39 .30 RPM
SRP009831_heart 15 .88 RPM
SRP009831_liver 13 .70 RPM
SRP009831_lung 16 .98 RPM
SRP009831_ovary 37 .22 RPM
SRP009831_skeletal_muscle 8 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000034495 ortholog_one2many 2 retrogenes
retro_btau_1753, retro_btau_208,
Choloepus hoffmanni ENSCHOG00000007391 ortholog_one2one 1 retrogene
retro_chof_1718,
Callithrix jacchus ENSCJAG00000019220 ortholog_one2one 2 retrogenes
retro_cjac_1351, retro_cjac_2990,
Felis catus ENSFCAG00000002105 ortholog_one2one 1 retrogene
retro_fcat_526,
Homo sapiens ENSG00000188342 ortholog_one2one 2 retrogenes
retro_hsap_2990, retro_hsap_368,
Gorilla gorilla ENSGGOG00000006657 ortholog_one2one 2 retrogenes
retro_ggor_2070, retro_ggor_379,
Myotis lucifugus ENSMLUG00000010505 ortholog_one2many 1 retrogene
retro_mluc_58,
Macaca mulatta ENSMMUG00000012634 ortholog_one2one 2 retrogenes
retro_mmul_1913, retro_mmul_483,
Monodelphis domestica ENSMODG00000025484 ortholog_one2many 1 retrogene
retro_mdom_231,
Nomascus leucogenys ENSNLEG00000002097 ortholog_one2many 1 retrogene
retro_nleu_2440,
Nomascus leucogenys ENSNLEG00000002106 ortholog_one2many 1 retrogene
retro_nleu_742,
Otolemur garnettii ENSOGAG00000012517 ortholog_one2one 1 retrogene
retro_ogar_2772,
Procavia capensis ENSPCAG00000005868 ortholog_one2one 3 retrogenes
retro_pcap_102, retro_pcap_173, retro_pcap_375,
Pongo abelii ENSPPYG00000005333 ortholog_one2many 1 retrogene
retro_pabe_93,
Pan troglodytes ENSPTRG00000005840 ortholog_one2one 3 retrogenes
retro_ptro_2022, retro_ptro_288, retro_ptro_2932,
Pteropus vampyrus ENSPVAG00000014092 ortholog_one2one 1 retrogene
retro_pvam_1490,
Rattus norvegicus ENSRNOG00000029316 ortholog_one2one 1 retrogene
retro_rnor_1288,
Ictidomys tridecemlineatus ENSSTOG00000006891 ortholog_one2many 1 retrogene
retro_itri_19,
Tursiops truncatus ENSTTRG00000002729 ortholog_one2one 2 retrogenes
retro_ttru_1003, retro_ttru_850,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_acar_174 80.52 66.23
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Download FASTA sequences of all ENSACAG00000028333 retrocopies