Parental gene:

ENSPPYG00000005333

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:13:44995978..45167587(+)


>ENSPPYG00000005333
ATGGCTGAGCGCGGGGAACTCGACTTGACCGGCGCCAAACAGAACACAGGAGTGTGGCTAGTCAAGGTTCCTAAATATTT
GTCACAGCAATGGGCTAAAGCCTCTGGAAGAGGTGAAGTTGGGAAACTGCGGATTGCCAAGACTCAAGGAAGGACTGAGG
TGTCATTTACTTTGAATGAGGATCTTGCAAATATTCATGATATTGGTGGAAAACCGGCTTCAGTCAGTGCTCCTAGAGAA
CATCCATTTGTCTTGCAAAGTGTTGGAGGACAGACATTAACAGTATTTACTGAGAGCTCATCAGATAAGCTGTCATTGGA
AGGAATAGTGGTACAAAGAGCTGAGTGCCGACCAGCTGCCAGTGAAAACTACATGCGATTAAAAAGATTGCAAATAGAAG
AGTCTTCCAAACCTGTGAGGCTATCACAACAGCTGGACAAAGTTGTAACAACCAATTACAAACCTGTTGCTAATCATCAA
TACAATATTGAATATGAAAGGAAAAAGAAAGAAGACGGAAAGCGAGCTCGAGCTGATAAACAACATGTTTTAGACATGCT
ATTTTCAGCCTTTGAGAAACATCAATACTATAATCTTAAGGACTTGGTGGACATCACAAAACAACCTGTGGTGTACCTGA
AGGAAATCTTAAAAGAAATTGGTGTTCAGAATGTAAAAGGGATCCACAAAAACACATGGGAGCTGAAGCCAGAGTACAGA
CACTATCAAGGAGAAGAAAAGAGTGACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 5 .42 RPM
SRP007412_cerebellum 4 .26 RPM
SRP007412_heart 4 .12 RPM
SRP007412_kidney 5 .20 RPM
SRP007412_liver 5 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000028333 ortholog_one2many 1 retrogene
retro_acar_174,
Bos taurus ENSBTAG00000034495 possible_ortholog 2 retrogenes
retro_btau_1753, retro_btau_208,
Choloepus hoffmanni ENSCHOG00000007391 ortholog_one2many 1 retrogene
retro_chof_1718,
Callithrix jacchus ENSCJAG00000019220 ortholog_one2many 2 retrogenes
retro_cjac_1351, retro_cjac_2990,
Felis catus ENSFCAG00000002105 possible_ortholog 1 retrogene
retro_fcat_526,
Homo sapiens ENSG00000188342 ortholog_one2many 2 retrogenes
retro_hsap_2990, retro_hsap_368,
Gorilla gorilla ENSGGOG00000006657 ortholog_one2many 2 retrogenes
retro_ggor_2070, retro_ggor_379,
Myotis lucifugus ENSMLUG00000010505 possible_ortholog 1 retrogene
retro_mluc_58,
Macaca mulatta ENSMMUG00000012634 ortholog_one2many 2 retrogenes
retro_mmul_1913, retro_mmul_483,
Monodelphis domestica ENSMODG00000025484 ortholog_many2many 1 retrogene
retro_mdom_231,
Nomascus leucogenys ENSNLEG00000002097 possible_ortholog 1 retrogene
retro_nleu_2440,
Nomascus leucogenys ENSNLEG00000002106 possible_ortholog 1 retrogene
retro_nleu_742,
Otolemur garnettii ENSOGAG00000012517 ortholog_one2many 1 retrogene
retro_ogar_2772,
Procavia capensis ENSPCAG00000005868 ortholog_one2many 3 retrogenes
retro_pcap_102, retro_pcap_173, retro_pcap_375,
Pan troglodytes ENSPTRG00000005840 ortholog_one2many 3 retrogenes
retro_ptro_2022, retro_ptro_288, retro_ptro_2932,
Pteropus vampyrus ENSPVAG00000014092 possible_ortholog 1 retrogene
retro_pvam_1490,
Rattus norvegicus ENSRNOG00000029316 ortholog_one2many 1 retrogene
retro_rnor_1288,
Ictidomys tridecemlineatus ENSSTOG00000006891 ortholog_many2many 1 retrogene
retro_itri_19,
Tursiops truncatus ENSTTRG00000002729 possible_ortholog 2 retrogenes
retro_ttru_1003, retro_ttru_850,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_93 98.39 100.00
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Download FASTA sequences of all ENSPPYG00000005333 retrocopies