Parental gene:

GTF2F2, ENSPTRG00000005840

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:GL392075.1:6200397..6365271(+)


>ENSPTRG00000005840
ATGGCCGAGCGCGGGGAACTCGACTTGACCGGCGCCAAACAGAACACAGGAGTGTGGCTAGTCAAGGTTCCTAAATATTT
GTCACAGCAATGGGCTAAAGCCTCTGGAAGAGGTGAAGTTGGGAAACTGCGGATTGCCAAGACTCAAGGAAGGACTGAGG
TGTCATTTACTTTGAATGAGGATCTTGCAAATATTCATGATATTGGTGGAAAACCAGCTTCAGTCAGTGCTCCTAGAGAA
CATCCATTTGTCTTGCAAAGTGTTGGAGGACAGACATTAACAGTATTTACTGAGAGCTCATCAGATAAGCTATCATTGGA
AGGAATAGTGGTACAAAGAGCTGAATGCCGACCAGCTGCCAGTGAAAACTACATGCGATTAAAAAGATTGCAAATAGAAG
AGTCTTCCAAACCTGTGAGGCTATCACAACAGCTGGACAAAGTTGTAACAACCAATTACAAACCTGTTGCTAATCATCAA
TACAATATTGAATATGAAAGGAAAAAGAAAGAAGACGGAAAGCGAGCTCGAGCTGATAAACAACATGTTTTAGACATGCT
ATTTTCAGCCTTTGAGAAACATCAATACTATAATCTTAAGGACTTGGTGGACATCACAAAACAACCTGTGGTGTACCTGA
AGGAAATCTTAAAAGAAATTGGTGTTCAGAATGTAAAAGGGATCCACAAAAACACATGGGAGCTGAAGCCAGAGTACAGA
CACTATCAAGGAGAAGAAAAGAGTGACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 7 .53 RPM
SRP007412_cerebellum 6 .63 RPM
SRP007412_heart 7 .72 RPM
SRP007412_kidney 8 .39 RPM
SRP007412_liver 6 .58 RPM
SRP007412_testis 19 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000028333 ortholog_one2one 1 retrogene
retro_acar_174,
Choloepus hoffmanni ENSCHOG00000007391 ortholog_one2one 1 retrogene
retro_chof_1718,
Callithrix jacchus ENSCJAG00000019220 ortholog_one2one 2 retrogenes
retro_cjac_1351, retro_cjac_2990,
Homo sapiens ENSG00000188342 ortholog_one2one 2 retrogenes
retro_hsap_2990, retro_hsap_368,
Gorilla gorilla ENSGGOG00000006657 ortholog_one2one 2 retrogenes
retro_ggor_2070, retro_ggor_379,
Myotis lucifugus ENSMLUG00000010505 possible_ortholog 1 retrogene
retro_mluc_58,
Macaca mulatta ENSMMUG00000012634 ortholog_one2one 2 retrogenes
retro_mmul_1913, retro_mmul_483,
Monodelphis domestica ENSMODG00000025484 ortholog_one2many 1 retrogene
retro_mdom_231,
Nomascus leucogenys ENSNLEG00000002097 possible_ortholog 1 retrogene
retro_nleu_2440,
Nomascus leucogenys ENSNLEG00000002106 possible_ortholog 1 retrogene
retro_nleu_742,
Otolemur garnettii ENSOGAG00000012517 ortholog_one2one 1 retrogene
retro_ogar_2772,
Procavia capensis ENSPCAG00000005868 ortholog_one2one 3 retrogenes
retro_pcap_102, retro_pcap_173, retro_pcap_375,
Pongo abelii ENSPPYG00000005333 ortholog_one2many 1 retrogene
retro_pabe_93,
Rattus norvegicus ENSRNOG00000029316 ortholog_one2one 1 retrogene
retro_rnor_1288,
Ictidomys tridecemlineatus ENSSTOG00000006891 ortholog_one2many 1 retrogene
retro_itri_19,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_288 58.99 70.28
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2. retro_ptro_2022 79.91 91.57
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3. retro_ptro_2932 80.79 91.57
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Download FASTA sequences of all ENSPTRG00000005840 retrocopies