Parental gene: | GTF2F2, ENSPTRG00000005840 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | GL392075.1:6200397..6365271(+) |
>ENSPTRG00000005840
ATGGCCGAGCGCGGGGAACTCGACTTGACCGGCGCCAAACAGAACACAGGAGTGTGGCTAGTCAAGGTTCCTAAATATTT
GTCACAGCAATGGGCTAAAGCCTCTGGAAGAGGTGAAGTTGGGAAACTGCGGATTGCCAAGACTCAAGGAAGGACTGAGG
TGTCATTTACTTTGAATGAGGATCTTGCAAATATTCATGATATTGGTGGAAAACCAGCTTCAGTCAGTGCTCCTAGAGAA
CATCCATTTGTCTTGCAAAGTGTTGGAGGACAGACATTAACAGTATTTACTGAGAGCTCATCAGATAAGCTATCATTGGA
AGGAATAGTGGTACAAAGAGCTGAATGCCGACCAGCTGCCAGTGAAAACTACATGCGATTAAAAAGATTGCAAATAGAAG
AGTCTTCCAAACCTGTGAGGCTATCACAACAGCTGGACAAAGTTGTAACAACCAATTACAAACCTGTTGCTAATCATCAA
TACAATATTGAATATGAAAGGAAAAAGAAAGAAGACGGAAAGCGAGCTCGAGCTGATAAACAACATGTTTTAGACATGCT
ATTTTCAGCCTTTGAGAAACATCAATACTATAATCTTAAGGACTTGGTGGACATCACAAAACAACCTGTGGTGTACCTGA
AGGAAATCTTAAAAGAAATTGGTGTTCAGAATGTAAAAGGGATCCACAAAAACACATGGGAGCTGAAGCCAGAGTACAGA
CACTATCAAGGAGAAGAAAAGAGTGACTAA
ATGGCCGAGCGCGGGGAACTCGACTTGACCGGCGCCAAACAGAACACAGGAGTGTGGCTAGTCAAGGTTCCTAAATATTT
GTCACAGCAATGGGCTAAAGCCTCTGGAAGAGGTGAAGTTGGGAAACTGCGGATTGCCAAGACTCAAGGAAGGACTGAGG
TGTCATTTACTTTGAATGAGGATCTTGCAAATATTCATGATATTGGTGGAAAACCAGCTTCAGTCAGTGCTCCTAGAGAA
CATCCATTTGTCTTGCAAAGTGTTGGAGGACAGACATTAACAGTATTTACTGAGAGCTCATCAGATAAGCTATCATTGGA
AGGAATAGTGGTACAAAGAGCTGAATGCCGACCAGCTGCCAGTGAAAACTACATGCGATTAAAAAGATTGCAAATAGAAG
AGTCTTCCAAACCTGTGAGGCTATCACAACAGCTGGACAAAGTTGTAACAACCAATTACAAACCTGTTGCTAATCATCAA
TACAATATTGAATATGAAAGGAAAAAGAAAGAAGACGGAAAGCGAGCTCGAGCTGATAAACAACATGTTTTAGACATGCT
ATTTTCAGCCTTTGAGAAACATCAATACTATAATCTTAAGGACTTGGTGGACATCACAAAACAACCTGTGGTGTACCTGA
AGGAAATCTTAAAAGAAATTGGTGTTCAGAATGTAAAAGGGATCCACAAAAACACATGGGAGCTGAAGCCAGAGTACAGA
CACTATCAAGGAGAAGAAAAGAGTGACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 7 .53 RPM |
| SRP007412_cerebellum | 6 .63 RPM |
| SRP007412_heart | 7 .72 RPM |
| SRP007412_kidney | 8 .39 RPM |
| SRP007412_liver | 6 .58 RPM |
| SRP007412_testis | 19 .29 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000028333 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000007391 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000019220 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000188342 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000006657 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000010505 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000012634 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000025484 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000002097 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000002106 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000012517 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000005868 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000005333 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000029316 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000006891 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_288 | 58.99 | 70.28 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2022 | 79.91 | 91.57 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2932 | 80.79 | 91.57 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000005840 retrocopies