Parental gene:

Gtf2f2, ENSRNOG00000029316

Aliases:Gtf2f2, Rap30
Description:general transcription factor IIF subunit 2 [Source:RefSeq peptide;Acc:NP_112304]
Organism:Rat (Rattus norvegicus)
Coordinates:15:61647680..61771945(-)


>ENSRNOG00000029316
ATGGCGGAGCGCGGGGAACTCGATCTGACGGGCGCCAAACAGAACACCGGCGTGTGGCTGGTGAAGGTTCCTAAATATTT
GTCCCAGCAATGGGCAAAAGCCCCTGGAAGAGGTGAAGTTGGGAAACTGAGGATTGCCAAGAATCAAGGAAGGACTGAGG
TATCATTTACTTTGAATGAGGATCTTGCGAATATTCATGATATCGGTGGGAAACCAGCTTCAGTCAGTGCTCCTAGAGAA
CATCCATTTGTCTTGCAAAGTGTTGGAGGACAGACATTAACAGTGTTCACCGAGAGCTCCTCAGATAAACTGTCATTGGA
AGGAATAGTGGTTCAGAGAGCGGAATGCCGACCTGCTGCCAGTGAAAACTACATGAAACTAAAGAGATTGCAAATAGAAG
AATCTTCCAAACCTGTAAGGCTCTCACAACAGCTGGACAAAGTTGTAACCACCAATTACAAGCCTGTCGCTAACCATCAG
TACAATATTGAATATGAAAGGAAGAAGAAAGAAGATGGAAAGCGAGCTCGGGCAGACAAACAACACGTCCTAGACATGCT
GTTCTCAGCCTTTGAGAAACATCAGTACTATAATCTTAAGGACTTGGTGGACATCACAAAGCAACCTGTGGGATACCTGA
AAGAAATCTTGAAAGAAATCGGCATTCAGAATGTAAAAGGAATTCACAAGAATACGTGGGAGCTGAAGCCAGAGTACAGG
CATTACCAAACAGAGGAGAAGAGCGACTGA

Library Parental gene expression (RPM)
SRP017611_brain 6 .69 RPM
SRP017611_kidney 6 .49 RPM
SRP017611_liver 4 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000028333 ortholog_one2one 1 retrogene
retro_acar_174,
Bos taurus ENSBTAG00000034495 ortholog_one2one 2 retrogenes
retro_btau_1753, retro_btau_208,
Choloepus hoffmanni ENSCHOG00000007391 ortholog_one2one 1 retrogene
retro_chof_1718,
Callithrix jacchus ENSCJAG00000019220 ortholog_one2one 2 retrogenes
retro_cjac_1351, retro_cjac_2990,
Felis catus ENSFCAG00000002105 ortholog_one2one 1 retrogene
retro_fcat_526,
Homo sapiens ENSG00000188342 ortholog_one2one 2 retrogenes
retro_hsap_2990, retro_hsap_368,
Gorilla gorilla ENSGGOG00000006657 ortholog_one2one 2 retrogenes
retro_ggor_2070, retro_ggor_379,
Myotis lucifugus ENSMLUG00000010505 ortholog_one2many 1 retrogene
retro_mluc_58,
Macaca mulatta ENSMMUG00000012634 ortholog_one2one 2 retrogenes
retro_mmul_1913, retro_mmul_483,
Monodelphis domestica ENSMODG00000025484 ortholog_one2many 1 retrogene
retro_mdom_231,
Nomascus leucogenys ENSNLEG00000002097 ortholog_one2many 1 retrogene
retro_nleu_2440,
Nomascus leucogenys ENSNLEG00000002106 ortholog_one2many 1 retrogene
retro_nleu_742,
Otolemur garnettii ENSOGAG00000012517 ortholog_one2one 1 retrogene
retro_ogar_2772,
Procavia capensis ENSPCAG00000005868 ortholog_one2one 3 retrogenes
retro_pcap_102, retro_pcap_173, retro_pcap_375,
Pongo abelii ENSPPYG00000005333 ortholog_one2many 1 retrogene
retro_pabe_93,
Pan troglodytes ENSPTRG00000005840 ortholog_one2one 3 retrogenes
retro_ptro_2022, retro_ptro_288, retro_ptro_2932,
Pteropus vampyrus ENSPVAG00000014092 ortholog_one2one 1 retrogene
retro_pvam_1490,
Ictidomys tridecemlineatus ENSSTOG00000006891 ortholog_one2many 1 retrogene
retro_itri_19,
Tursiops truncatus ENSTTRG00000002729 ortholog_one2one 2 retrogenes
retro_ttru_1003, retro_ttru_850,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1288 96.84 63.45
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Download FASTA sequences of all ENSRNOG00000029316 retrocopies