Parental gene:

TUBA1C, ENSBTAG00000039992

Aliases:TUBA1C, TUBA1, TUBA4A
Description:Tubulin alpha-1C chain [Source:UniProtKB/Swiss-Prot;Acc:Q3ZCJ7]
Organism:Cow (Bos taurus)
Coordinates:5:30728351..30735852(-)


>ENSBTAG00000039992
ATGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAACTCTACTGCCTGGA
ACACGGCATTCAGCCCGATGGCCAGATGCCAAGTGACAAGACTATTGGGGGAGGAGACGACTCCTTCAACACCTTCTTCA
GTGAGACGGGGGCTGGCAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACAGTCATTGATGAGGTGCGCACT
GGCACCTACCGCCAGCTCTTCCACCCTGAGCAACTTATCTCAGGCAAAGAAGATGCCGCCAATAACTATGCCCGAGGTCA
CTACACCATTGGCAAGGAGATCATTGACCTCGTCTTGGACCGAGTTCGGAAACTGGCTGACCAGTGCACGGGTCTTCAGG
GCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGTTCTGGGTTCACCTCCCTGCTGATGGAACGCCTCTCTGTCGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACAGCTGTCGTTGAGCCCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGCC
GTAGAAACCTCGACATTGAGCGCCCAACCTACACAAATCTTAACCGCCTCATGAGCCAGATAGTGTCCTCCATCACTGCT
TCCCTGAGGTTTGATGGCGCCCTGAATGTGGATCTGACAGAGTTCCAGACCAACCTGGTGCCCTATCCCCGCATCCACTT
CCCTCTGGCCACATACGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATG
CTTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGGAAATACATGGCCTGCTGCCTGTTGTACCGT
GGTGATGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTG
CCCCACTGGCTTCAAGGTTGGCATTAACTACCAGCCTCCCACTGTGGTACCTGGTGGCGACCTGGCCAAAGTACAGCGAG
CTGTGTGCATGCTGAGCAACACCACAGCTGTTGCTGAGGCCTGGGCGCGCCTGGACCACAAGTTTGACCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTACGTGGGTGAGGGCATGGAGGAAGGAGAGTTTTCTGAGGCCCGTGAGGACATGGCTGC
CCTTGAGAAGGATTATGAGGAGGTTGGAGCCGACAGTGCAGAGGGAGATGATGAGGGTGACGAGTATTAG

Library Parental gene expression (RPM)
SRP017611_brain 1 .23 RPM
SRP017611_kidney 13 .51 RPM
SRP017611_liver 7 .48 RPM
ERP005899_muscle 23 .23 RPM
ERP005899_liver 2 .23 RPM
SRP030211_testis 10 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001489 within_species_paralog 3 retrogenes
retro_btau_251, retro_btau_350, retro_btau_929,
Bos taurus ENSBTAG00000012244 within_species_paralog 1 retrogene
retro_btau_402,
Canis familiaris ENSCAFG00000008661 possible_ortholog 2 retrogenes
retro_cfam_960, retro_cfam_978,
Choloepus hoffmanni ENSCHOG00000008444 possible_ortholog 2 retrogenes
retro_chof_179, retro_chof_360,
Equus caballus ENSECAG00000009504 ortholog_one2many 1 retrogene
retro_ecab_1041,
Erinaceus europaeus ENSEEUG00000004068 possible_ortholog 1 retrogene
retro_eeur_669,
Felis catus ENSFCAG00000024852 possible_ortholog 1 retrogene
retro_fcat_361,
Felis catus ENSFCAG00000028689 possible_ortholog 3 retrogenes
retro_fcat_1802, retro_fcat_254, retro_fcat_798,
Macropus eugenii ENSMEUG00000010779 possible_ortholog 2 retrogenes
retro_meug_1648, retro_meug_2174,
Mus musculus ENSMUSG00000043091 ortholog_one2many 1 retrogene
retro_mmus_843,
Oryctolagus cuniculus ENSOCUG00000028032 possible_ortholog 1 retrogene
retro_ocun_111,
Otolemur garnettii ENSOGAG00000009435 possible_ortholog 1 retrogene
retro_ogar_240,
Pteropus vampyrus ENSPVAG00000004646 possible_ortholog 1 retrogene
retro_pvam_929,
Rattus norvegicus ENSRNOG00000015544 ortholog_one2many 3 retrogenes
retro_rnor_1193, retro_rnor_2260, retro_rnor_960,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_840 99.33 100.00
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Download FASTA sequences of all ENSBTAG00000039992 retrocopies