RetrogeneDB ID: | retro_btau_402 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 11:46014780..46015810(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUBA1B | ||
Ensembl ID: | ENSBTAG00000012244 | ||
Aliases: | None | ||
Description: | Tubulin alpha-1B chain [Source:UniProtKB/Swiss-Prot;Acc:P81947] |
Percent Identity: | 84. % |
Parental protein coverage: | 76.5 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | ISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV |
IS.HVGQAGV.IGNACWELYCLEH.IQPDGQMPSDKT.GG.DD.FNTFFSETGAGK.VPRAV..DLEPTV | |
Retrocopy | ISFHVGQAGVHIGNACWELYCLEHSIQPDGQMPSDKTTGGEDDTFNTFFSETGAGKRVPRAVSADLEPTV |
Parental | IDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLV-FHSFGG |
IDEVRTGTY.QL.HPEQLIT.KEDAA.N.A.GHYTIGKEIIDLVLDRI.KLADQCTGLQGFLV.FHSFGG | |
Retrocopy | IDEVRTGTYFQLLHPEQLITDKEDAASNCA*GHYTIGKEIIDLVLDRIWKLADQCTGLQGFLV<FHSFGG |
Parental | GTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTT-HTTLEH-SDCAFMVDNEAIYD |
GTGS.F.SLLME.LSVDY.KKSKLE..IYPA.QVST.VV.PYN.ILTT.HT.LEH.SD.AFM.DNEAIYD | |
Retrocopy | GTGSEFASLLMEHLSVDYSKKSKLELFIYPALQVSTTVV*PYNTILTT<HTILEH<SDFAFMIDNEAIYD |
Parental | ICRRNLDIERPTYTNLNRL-ISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK |
.C.RNLDIE.PTY.NLN.L.ISQIVS.ITASLR.DGAL.VDLTEFQTNLV.YP.IHFPLATY.PVISAEK | |
Retrocopy | TCCRNLDIEHPTYMNLNCL<ISQIVSPITASLRSDGALTVDLTEFQTNLVLYPHIHFPLATYTPVISAEK |
Parental | AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDV-NAAIATIKTKRSIQFVDWCPT |
AYHEQLSVAEITNACFEP.NQM.KCDPR.GKYMACCLLY.GDVVPKDV....I.TIKTK..IQFV.WCPT | |
Retrocopy | AYHEQLSVAEITNACFEPSNQMEKCDPRDGKYMACCLLYYGDVVPKDV<CTTIITIKTKCIIQFVAWCPT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 35 .33 RPM |
ERP005899_muscle | 0 .00 RPM | 480 .75 RPM |
SRP017611_brain | 0 .00 RPM | 593 .79 RPM |
SRP017611_kidney | 0 .12 RPM | 112 .56 RPM |
SRP017611_liver | 0 .00 RPM | 69 .47 RPM |
SRP030211_testis | 0 .00 RPM | 49 .61 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001489 | 3 retrocopies | |
Bos taurus | ENSBTAG00000012244 | 1 retrocopy |
retro_btau_402 ,
|
Bos taurus | ENSBTAG00000039992 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000020874 | 2 retrocopies | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Homo sapiens | ENSG00000123416 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010779 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000011167 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000015206 | 2 retrocopies | |
Mus musculus | ENSMUSG00000023004 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012950 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000000190 | 2 retrocopies |