Parental gene:

TUBA1B, ENSBTAG00000012244

Aliases:None
Description:Tubulin alpha-1B chain [Source:UniProtKB/Swiss-Prot;Acc:P81947]
Organism:Cow (Bos taurus)
Coordinates:5:30864528..30868119(+)


>ENSBTAG00000012244
ATGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACACGGCATTCAGCCCGATGGCCAGATGCCAAGTGACAAGACTATTGGGGGAGGAGACGACTCCTTCAACACCTTCTTCA
GTGAGACAGGGGCTGGCAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACAGTCATTGATGAGGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAAGAAGATGCTGCCAATAACTATGCCCGGGGTCA
CTACACCATTGGCAAGGAGATCATTGACCTCGTCTTGGACCGAATTCGGAAACTGGCTGACCAATGCACAGGTCTTCAAG
GCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGTTCTGGGTTCACCTCCCTGCTGATGGAACGCCTCTCTGTCGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACAGCTGTCGTTGAGCCCTACAACTC
TATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGACATTGAGCGCCCAACCTACACAAATCTTAACCGCCTTATTAGCCAGATAGTGTCCTCCATCACTGCT
TCCCTGAGGTTTGATGGCGCCCTGAATGTGGATCTGACAGAGTTCCAGACCAACCTGGTGCCCTATCCCCGCATCCACTT
CCCTCTGGCCACATACGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATG
CTTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGGAAATACATGGCCTGCTGCCTGTTGTACCGT
GGTGACGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGCAGCATCCAGTTTGTGGACTGGTG
CCCCACTGGCTTCAAGGTTGGCATTAACTACCAGCCTCCCACTGTGGTACCTGGTGGCGACCTGGCCAAAGTACAGCGAG
CTGTGTGCATGCTGAGCAACACCACAGCCATCGCTGAGGCCTGGGCTCGCCTGGACCACAAATTTGACCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTACGTGGGTGAGGGCATGGAGGAAGGAGAGTTTTCTGAGGCCCGTGAGGACATGGCTGC
CCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTGGAAGGAGAGGGAGAGGAAGAAGGAGAGGAATATTAA

Library Parental gene expression (RPM)
ERP005899_liver 35 .33 RPM
ERP005899_muscle 480 .75 RPM
SRP017611_brain 593 .79 RPM
SRP017611_kidney 112 .56 RPM
SRP017611_liver 69 .47 RPM
SRP030211_testis 49 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001489 within_species_paralog 3 retrogenes
retro_btau_251, retro_btau_350, retro_btau_929,
Bos taurus ENSBTAG00000039992 within_species_paralog 1 retrogene
retro_btau_840,
Choloepus hoffmanni ENSCHOG00000008444 possible_ortholog 2 retrogenes
retro_chof_179, retro_chof_360,
Callithrix jacchus ENSCJAG00000020874 ortholog_one2one 2 retrogenes
retro_cjac_1603, retro_cjac_1861,
Felis catus ENSFCAG00000028689 possible_ortholog 3 retrogenes
retro_fcat_1802, retro_fcat_254, retro_fcat_798,
Homo sapiens ENSG00000123416 ortholog_one2one 1 retrogene
retro_hsap_808,
Macropus eugenii ENSMEUG00000010779 possible_ortholog 2 retrogenes
retro_meug_1648, retro_meug_2174,
Macropus eugenii ENSMEUG00000011167 ortholog_one2one 4 retrogenes
retro_meug_1121, retro_meug_157, retro_meug_1616, retro_meug_1964,
Monodelphis domestica ENSMODG00000015206 ortholog_one2one 2 retrogenes
retro_mdom_1632, retro_mdom_348,
Mus musculus ENSMUSG00000023004 ortholog_one2one 6 retrogenes
retro_mmus_1562, retro_mmus_1607, retro_mmus_1742, retro_mmus_1987, retro_mmus_3297, retro_mmus_3327,
Otolemur garnettii ENSOGAG00000009435 possible_ortholog 1 retrogene
retro_ogar_240,
Pan troglodytes ENSPTRG00000012950 ortholog_one2one 1 retrogene
retro_ptro_2158,
Sus scrofa ENSSSCG00000000190 ortholog_one2one 2 retrogenes
retro_sscr_380, retro_sscr_702,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_402 84.00 76.50
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Download FASTA sequences of all ENSBTAG00000012244 retrocopies