Parental gene:

PAPOLA, ENSBTAG00000004054

Aliases:PAPOLA, PAPOLB
Description:Poly(A) polymerase alpha [Source:UniProtKB/Swiss-Prot;Acc:P25500]
Organism:Cow (Bos taurus)
Coordinates:21:62980456..63032069(+)


>ENSBTAG00000004054
ATGCCGTTTCCAGTTACAACACAGGGATCACAGCAAACACAGCCGCCACAGAAGCACTATGGCATTACTTCTCCCATCAG
CTTAGCAGCCCCCAAGGAGACTGACTGCCTGCTCACACAGAAGCTGGTGGAGACTCTGAAGCCCTTCGGGGTTTTTGAAG
AGGAAGAGGAACTGCAGCGCAGGATTTTAATTTTGGGAAAATTAAATAACCTGGTAAAAGAGTGGATACGAGAAATCAGT
GAAAGCAAGAATCTTCCACAATCTGTAATTGAAAATGTTGGTGGGAAAATTTTTACATTTGGATCTTATAGATTAGGAGT
ACATACAAAAGGTGCTGATATTGATGCATTGTGTGTTGCACCAAGACATGTTGATCGAAGTGATTTTTTCACCTCATTCT
ATGATAAGTTGAAATTACAGGAAGAAGTAAAAGATTTAAGAGCTGTTGAAGAGGCATTTGTACCAGTTATCAAACTGTGT
TTTGATGGGATAGAGATTGATATTTTGTTTGCAAGATTAGCACTGCAGACTATTCCAGAAGACTTGGACTTAAGAGATGA
CAGTCTGCTTAAAAATTTAGATATAAGATGTATAAGAAGTCTTAACGGTTGCAGGGTAACCGATGAAATTTTACATCTAG
TACCAAACATTGACAACTTCAGGTTAACCCTGAGAGCTATCAAACTGTGGGCCAAACGCCACAACATCTATTCCAATATA
TTAGGTTTCCTCGGTGGTGTTTCCTGGGCTATGCTAGTAGCAAGAACTTGCCAGCTTTATCCAAATGCAATAGCATCAAC
TCTTGTACATAAATTTTTCTTGGTATTTTCTAAATGGGAATGGCCAAATCCAGTCCTATTGAAACAGCCTGAAGAATGCA
ATCTTAATTTGCCTGTATGGGACCCAAGGGTAAACCCCAGTGATAGGTACCATCTTATGCCTATAATTACACCAGCATAC
CCACAACAGAACTCCACGTACAATGTGTCCGTTTCAACACGGATGGTCATGGTTGAGGAGTTTAAACAAGGTCTTGCTAT
CACAGATGAAATTTTGCTGAGTAAGGCAGAGTGGTCCAAACTTTTTGAAGCTCCAAACTTCTTTCAAAAGTACAAGCATT
ATATTGTACTTCTAGCAAGTGCACCAACTGAAAAACAACGCCTAGAATGGGTGGGCTTGGTGGAATCAAAAATCCGAATC
CTGGTTGGAAGTTTGGAGAAGAATGAGTTTATTACACTGGCTCATGTGAATCCCCAGTCATTTCCAGCACCCAAAGAAAA
TCCCGACAAGGAAGAATTTCGCACGATGTGGGTGATTGGGTTAGTGTTTAAAAAAACAGAAAACTCTGAAAATCTCAGTG
TTGATCTCACCTATGATATTCAGTCTTTCACAGATACAGTTTATAGGCAAGCAATAAACAGCAAGATGTTTGAGGTGGAC
ATGAAAATTGCTGCGATGCATGTAAAAAGAAAGCAACTCCATCAACTACTGCCTAGTCATGTGCTTCAGAAAAAGAAAAA
GCATTCAACAGAAGGCGTCAAGTTGACACCTCTGAATGATAGCAGCCTCGACTTGTCTATGGACAGTGACAACAGCATGT
CTGTGCCTTCACCTACTAGTGCTATGAAGACCAGTCCGTTGAACAGTTCTGGCAGCTCTCAGGGCAGAAACAGTCCTGCT
CCAGCTGTAACAGCAGCATCTGTGACCAACATACAGGCTACTGAAGTTTCTCTGCCACAAATAAATTCCAGTGAAAGCTC
AGGGGGTACATCGAGTGAAAGCATTCCTCAAACTGCCACACAACCAGCCATTTCATCACCACCAAAGCCTACGGTCTCCA
GAGTTGTTTCCTCAACACGTTTGGTAAACCCACCACCAAGACCTTCAGGAAATGCAGCAGCAAAGATACCTAATCCTATA
GTAGGAGTCAAGAGGACATCCTCACCTCATAAAGAAGAGAGCCCCAAGAAAACCAAAACAGAAGAGGATGAAACAAGTGA
AGATGCTAACTGTCTTGCTTTGAGTGGACATGATAAAACAGAAACAAAGGAACAACTTGATACAGAGACAAGTACAACTC
AATCAGAAACCATTCAGACAGCGACTTCTCTGTTGGCCTCTCAGAAAACATCCAGTACAGACCTTTCTGATATCCCTGCT
CTCCCTGCAAACCCTATTCCTGTTATCAAGAATTCAATAAAACTGAGATTGAATCGGTAA

Library Parental gene expression (RPM)
SRP017611_brain 79 .57 RPM
SRP017611_kidney 126 .31 RPM
SRP017611_liver 54 .22 RPM
ERP005899_muscle 107 .11 RPM
ERP005899_liver 76 .93 RPM
SRP030211_testis 200 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014142 ortholog_one2one 1 retrogene
retro_amel_517,
Canis familiaris ENSCAFG00000017783 ortholog_one2one 1 retrogene
retro_cfam_1783,
Callithrix jacchus ENSCJAG00000006512 ortholog_one2one 2 retrogenes
retro_cjac_1763, retro_cjac_543,
Homo sapiens ENSG00000090060 ortholog_one2one 1 retrogene
retro_hsap_30,
Gorilla gorilla ENSGGOG00000006287 ortholog_one2one 1 retrogene
retro_ggor_202,
Myotis lucifugus ENSMLUG00000010922 ortholog_one2one 1 retrogene
retro_mluc_1396,
Macaca mulatta ENSMMUG00000018610 ortholog_one2one 1 retrogene
retro_mmul_1675,
Monodelphis domestica ENSMODG00000012887 ortholog_one2many 2 retrogenes
retro_mdom_1714, retro_mdom_1916,
Mustela putorius furo ENSMPUG00000003054 ortholog_one2one 1 retrogene
retro_mputfur_1375,
Mus musculus ENSMUSG00000021111 possible_ortholog 1 retrogene
retro_mmus_37,
Nomascus leucogenys ENSNLEG00000000625 ortholog_one2one 1 retrogene
retro_nleu_2771,
Otolemur garnettii ENSOGAG00000004611 ortholog_one2one 1 retrogene
retro_ogar_987,
Pongo abelii ENSPPYG00000006128 ortholog_one2one 1 retrogene
retro_pabe_3113,
Pan troglodytes ENSPTRG00000006704 ortholog_one2one 1 retrogene
retro_ptro_2595,
Pteropus vampyrus ENSPVAG00000013925 ortholog_one2one 1 retrogene
retro_pvam_360,
Vicugna pacos ENSVPAG00000006464 ortholog_one2one 1 retrogene
retro_vpac_378,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1078 93.14 69.01
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Download FASTA sequences of all ENSBTAG00000004054 retrocopies