Parental gene:

PAPOLA, ENSCAFG00000017783

Aliases:None
Description:poly(A) polymerase alpha [Source:HGNC Symbol;Acc:14981]
Organism:Dog (Canis familiaris)
Coordinates:8:65240718..65281336(+)


>ENSCAFG00000017783
ATGCCTTTTAAAAGCAGTCATTTTAGTCCAGTTACAACGCAGGGATCACAACAAACTCAGCCGCCCCAGAAGCACTATGG
CATTACCTCTCCTATCAGCTTAGCAGCCCCCAAGGAGACTGACTGCCTGCTTACACAAAAACTAATTGAGACTCTGAAGC
CCTTTGGGGTTTTTGAAGAGGAAGAGGAACTGCAGCGCAGGATTTTAATTTTGGGAAAATTAAATAACCTGGTAAAAGAG
TGGATACGAGAAATCAGTGAAAGCAAGAATCTTCCGCAATCTGTAATTGAAAATGTTGGAGGAAAAATTTTTACATTTGG
ATCTTACAGATTAGGAGTACATACAAAAGGTGCCGATATTGATGCGTTGTGTGTTGCACCAAGACATGTTGATCGAAGTG
ACTTTTTCACCTCATTCTATGATAAGTTGAAATTACAGGAAGAAGTAAAAGATTTAAGAGCTGTTGAAGAGGCATTTGTA
CCAGTTATCAAACTGTGTTTTGATGGGATAGAGATTGATATTTTGTTTGCAAGATTAGCACTGCAGACGATTCCAGAAGA
CTTGGACTTACGAGACGATAGTCTGCTTAAGAATTTAGATATAAGATGCATAAGAAGTCTTAACGGTTGCAGGGTAACCG
ATGAAATTTTACATCTAGTACCAAACATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTGTGGGCCAAACGCCAC
AACATCTATTCCAATATATTAGGTTTCCTCGGTGGTGTTTCCTGGGCTATGCTAGTAGCAAGAACTTGCCAGCTTTATCC
AAATGCAATAGCATCAACTCTTGTACATAAATTTTTCTTGGTATTTTCTAAATGGGAATGGCCAAATCCAGTGCTATTGA
AACAGCCTGAAGAATGCAATCTTAATTTGCCTGTATGGGACCCAAGGGTAAACCCCAGTGATAGGTACCATCTTATGCCT
ATAATTACACCAGCATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCAACACGGATGGTCATGGTTGAGGAGTT
TAAACAAGGTCTTGCTATCACAGATGAAATTTTGCTGAGTAAGGCAGAGTGGTCCAAACTTTTTGAAGCTCCAAACTTCT
TTCAAAAGTACAAGCATTATATTGTACTTCTAGCAAGTGCACCAACAGAAAAACAACGCCTAGAATGGGTGGGCTTGGTG
GAGTCAAAAATCCGAATCCTGGTTGGAAGTTTGGAGAAGAATGAATTTATTACACTGGCTCATGTGAATCCCCAGTCATT
TCCAGCACCCAAAGAAAATCCTGACAAGGAAGAATTTCGCACGATGTGGGTGATTGGGTTAGTGTTTAAAAAAACAGAAA
ACTCTGAAAATCTCAGTGTTGATCTCACCTATGATATTCAGTCTTTCACAGATACAGTTTATAGGCAAGCAATAAACAGC
AAGATGTTTGAGGTGGACATGAAAATTGCGGCAATGCATGTAAAAAGAAAGCAACTCCATCAACTACTACCTAATCATGT
TCTCCAGAAAAAGAAAAAGCATTCGACGGAAGGTGTCAGATTGACACCTCTGAATGACAGCAGCCTCGACTTGTCTATGG
ACAGTGATAACAGCATGTCTGTGCCTTCACCTACTAGTGCTATGAAGACCAGTCCATTGAACAGTTCTGGCAGCTCTCAG
GGCAGAAACAGTCCTGCTCCAGCTGTAACAGCAGCATCTGTGACCAACCCACAGGCTACTGAAGTTTCTGTGCCACAAGT
AAATTCCACTGAAAGCTCAGGGGGTACATCGAGTGAAAGCATTCCTCAAACTGCCACACAACCAGCCATTTCACCACCAC
CAAAGCCTACGGTCTCCAGAGTTGTTTCTTCAACACGTCTGGTAAACCCACCACCTAGACCTTCAGGAAATGCAGCAACA
AAAATACCTAATCCTATAGTAGGAGTCAAGAGGACATCCTCACCTCATAAAGAAGAGAGTCCCAAGAAAACCAAAACAGA
AGAGGATGAAACAAGCGAAGATGCTAACTGTCTTGCTTTGAGTGGACATGATAAAACAGAAACAAAGGAACAACTTGATA
CAGAGACAAGTACAACTCAATCAGAAACTATTCACACAGCGGCTTCTCTGTTGGCCTCTCAGAAAACATCCAGTACAGAC
CTTTCTGATATCCCTGCTCTCCCTGCAAATCCTATTCCTGTTATCAAGAATTCAATAAAACTGAGATTGAATCGGTAA

Library Parental gene expression (RPM)
SRP017611_brain 74 .95 RPM
SRP017611_kidney 87 .96 RPM
SRP017611_liver 68 .74 RPM
SRP012049_cerebellum 123 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014142 ortholog_one2one 1 retrogene
retro_amel_517,
Bos taurus ENSBTAG00000004054 ortholog_one2one 1 retrogene
retro_btau_1078,
Callithrix jacchus ENSCJAG00000006512 ortholog_one2one 2 retrogenes
retro_cjac_1763, retro_cjac_543,
Homo sapiens ENSG00000090060 ortholog_one2one 1 retrogene
retro_hsap_30,
Gorilla gorilla ENSGGOG00000006287 ortholog_one2one 1 retrogene
retro_ggor_202,
Myotis lucifugus ENSMLUG00000010922 ortholog_one2one 1 retrogene
retro_mluc_1396,
Macaca mulatta ENSMMUG00000018610 ortholog_one2one 1 retrogene
retro_mmul_1675,
Monodelphis domestica ENSMODG00000012887 ortholog_one2many 2 retrogenes
retro_mdom_1714, retro_mdom_1916,
Mustela putorius furo ENSMPUG00000003054 ortholog_one2one 1 retrogene
retro_mputfur_1375,
Mus musculus ENSMUSG00000021111 possible_ortholog 1 retrogene
retro_mmus_37,
Nomascus leucogenys ENSNLEG00000000625 ortholog_one2one 1 retrogene
retro_nleu_2771,
Otolemur garnettii ENSOGAG00000004611 ortholog_one2one 1 retrogene
retro_ogar_987,
Pongo abelii ENSPPYG00000006128 ortholog_one2one 1 retrogene
retro_pabe_3113,
Pan troglodytes ENSPTRG00000006704 ortholog_one2one 1 retrogene
retro_ptro_2595,
Pteropus vampyrus ENSPVAG00000013925 ortholog_one2one 1 retrogene
retro_pvam_360,
Vicugna pacos ENSVPAG00000006464 ortholog_one2one 1 retrogene
retro_vpac_378,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1783 87.33 88.99
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Download FASTA sequences of all ENSCAFG00000017783 retrocopies