Parental gene:

ITGB1BP1, ENSBTAG00000013063

Aliases:None
Description:Integrin beta-1-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ZBM4]
Organism:Cow (Bos taurus)
Coordinates:11:87994385..88010369(+)


>ENSBTAG00000013063
ATGTTTCGGAAAGGCAAAAAGCGCCACAGCAGTAGCAGTTCCCAGAGCAGTGAAATCAGTACCAAGAGCAAGTCTGTAGA
CTCCAGCCTTGGGGGGCTCTCACGGTCCAGCACGGTGGCAAGCCTCGACACCGACTCCACCAAGAGCTCAGGACAAAGCA
ACAACAATTCAGACACCTGTGCAGAATTTCGAATAAAGTATGTTGGTGCCATTGAGAAACTGAAACTCTCAGAGGGGAAA
AGTCTTGAGGGGCCACTGGACCTGATAAATTATATAGATGTTGCTCAGCAAGATGGAAAGTTGCCCTTCGTTCCTCTGGA
GGAAGAATTTATTATGGGAGTTTCCAAGTACGGTATAAAAGTATCTACATCAGATCAGTATGACGTTCTGCATCGGCACG
CTCTGTATTTAATCATCCGGATGGTGTGTTATGATGATGGTCTCGGGTCAGGAAAGAGCTTACTGGCTCTGAAGACCACA
GATGCAAACAACCAAGAATACAGCCTGTGGGTTTACCAGTGCAACAGCCTGGAACAAGCACAAGCAATCTGCAAAGTTTT
ATCCACTGCTTTCGACTCTGTATTGACTTCTGAGAAACCTTGA

Library Parental gene expression (RPM)
SRP017611_brain 18 .41 RPM
SRP017611_kidney 19 .03 RPM
SRP017611_liver 8 .76 RPM
ERP005899_muscle 15 .52 RPM
ERP005899_liver 10 .45 RPM
SRP030211_testis 53 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013602 ortholog_one2one 2 retrogenes
retro_chof_1385, retro_chof_432,
Callithrix jacchus ENSCJAG00000006250 ortholog_one2one 3 retrogenes
retro_cjac_1650, retro_cjac_2776, retro_cjac_393,
Dasypus novemcinctus ENSDNOG00000008930 ortholog_one2one 3 retrogenes
retro_dnov_1422, retro_dnov_2198, retro_dnov_727,
Homo sapiens ENSG00000119185 ortholog_one2one 1 retrogene
retro_hsap_277,
Gorilla gorilla ENSGGOG00000001754 ortholog_one2one 1 retrogene
retro_ggor_321,
Macropus eugenii ENSMEUG00000006761 ortholog_one2one 1 retrogene
retro_meug_1434,
Microcebus murinus ENSMICG00000002359 ortholog_one2one 7 retrogenes
retro_mmur_1251, retro_mmur_1342, retro_mmur_1375, retro_mmur_1523, retro_mmur_1539, retro_mmur_244, retro_mmur_442,
Myotis lucifugus ENSMLUG00000010629 ortholog_one2one 2 retrogenes
retro_mluc_1218, retro_mluc_1752,
Macaca mulatta ENSMMUG00000018036 ortholog_one2one 1 retrogene
retro_mmul_563,
Nomascus leucogenys ENSNLEG00000013322 ortholog_one2one 1 retrogene
retro_nleu_1488,
Oryctolagus cuniculus ENSOCUG00000003726 ortholog_one2many 1 retrogene
retro_ocun_120,
Otolemur garnettii ENSOGAG00000001679 ortholog_one2one 4 retrogenes
retro_ogar_1235, retro_ogar_1383, retro_ogar_2353, retro_ogar_981,
Procavia capensis ENSPCAG00000005976 ortholog_one2one 1 retrogene
retro_pcap_241,
Pongo abelii ENSPPYG00000012667 ortholog_one2one 1 retrogene
retro_pabe_391,
Pan troglodytes ENSPTRG00000011637 ortholog_one2one 1 retrogene
retro_ptro_231,
Sorex araneus ENSSARG00000009799 ortholog_one2one 1 retrogene
retro_sara_735,
Tarsius syrichta ENSTSYG00000014537 ortholog_one2one 1 retrogene
retro_tsyr_225,
Tursiops truncatus ENSTTRG00000000859 ortholog_one2one 1 retrogene
retro_ttru_712,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1221 82.09 99.50
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2. retro_btau_1435 79.85 67.00
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Download FASTA sequences of all ENSBTAG00000013063 retrocopies