Parental gene:

ITGB1BP1, ENSCJAG00000006250

Aliases:None
Description:integrin beta 1 binding protein 1 [Source:HGNC Symbol;Acc:23927]
Organism:Marmoset (Callithrix jacchus)
Coordinates:14:99244540..99257875(+)


>ENSCJAG00000006250
ATGTTTCGCAAAGGCAAGAAACGACACAGTAGTAGCAGTTCCCAAAGCAGTGAAATCAGTACTAAGAGCAAGTCTGTAGA
TTCTAGCCTTGGGGGTCTTTCACGATCCAGCACTGTGGCCAGCCTCGACACAGATTCCACCAAAAGCTCAGGACAAAGCA
ACAGTAATTCAGATACCTGTGCAGAATTTCGAATAAAATATGTTGGTGCCATTGAGAAACTGAAACTGTCTGAGGGAGAA
GGTCTTGAAGGACCCTTGGACCTGATAAACTACATAGATGTTGCTCAGCAAGATGGAAAGTTGCCTTTTGTTCCTCCGGA
GGAAGAATTTATTATGGGAGTTTCCAAGTATGGCATAAAAGTATCAACATCAGATCAATATGATGTTTTGCACAGGCATG
CTCTCTACTTAATAATCCGGATGGTGTGTTACGATGATGGTCTGGGGGCAGGAAAAAGCTTACTGGCTCTGAAGACCACA
GATGCAAGCAATGAAGAATACAGCCTGTGGGTGTATCAGTGCAACAGCTTGGAACAAGCACAAGCCATTTGCAAGGTTTT
ATCCACCGCTTTTGACTCTGTATTAACATCTGAGAAACCTTGA

Library Parental gene expression (RPM)
SRP051959_spleen 8 .82 RPM
SRP051959_skeletal_muscle 9 .67 RPM
SRP051959_lymph_node 9 .93 RPM
SRP051959_lung 9 .16 RPM
SRP051959_liver 5 .59 RPM
SRP051959_kidney 6 .39 RPM
SRP051959_heart 11 .19 RPM
SRP051959_colon 6 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000013063 ortholog_one2one 2 retrogenes
retro_btau_1221, retro_btau_1435,
Choloepus hoffmanni ENSCHOG00000013602 ortholog_one2one 2 retrogenes
retro_chof_1385, retro_chof_432,
Dasypus novemcinctus ENSDNOG00000008930 ortholog_one2one 3 retrogenes
retro_dnov_1422, retro_dnov_2198, retro_dnov_727,
Homo sapiens ENSG00000119185 ortholog_one2one 1 retrogene
retro_hsap_277,
Gorilla gorilla ENSGGOG00000001754 ortholog_one2one 1 retrogene
retro_ggor_321,
Macropus eugenii ENSMEUG00000006761 ortholog_one2one 1 retrogene
retro_meug_1434,
Microcebus murinus ENSMICG00000002359 ortholog_one2one 7 retrogenes
retro_mmur_1251, retro_mmur_1342, retro_mmur_1375, retro_mmur_1523, retro_mmur_1539, retro_mmur_244, retro_mmur_442,
Myotis lucifugus ENSMLUG00000010629 ortholog_one2one 2 retrogenes
retro_mluc_1218, retro_mluc_1752,
Macaca mulatta ENSMMUG00000018036 ortholog_one2one 1 retrogene
retro_mmul_563,
Nomascus leucogenys ENSNLEG00000013322 ortholog_one2one 1 retrogene
retro_nleu_1488,
Oryctolagus cuniculus ENSOCUG00000003726 ortholog_one2many 1 retrogene
retro_ocun_120,
Otolemur garnettii ENSOGAG00000001679 ortholog_one2one 4 retrogenes
retro_ogar_1235, retro_ogar_1383, retro_ogar_2353, retro_ogar_981,
Procavia capensis ENSPCAG00000005976 ortholog_one2one 1 retrogene
retro_pcap_241,
Pongo abelii ENSPPYG00000012667 ortholog_one2one 1 retrogene
retro_pabe_391,
Pan troglodytes ENSPTRG00000011637 ortholog_one2one 1 retrogene
retro_ptro_231,
Sorex araneus ENSSARG00000009799 ortholog_one2one 1 retrogene
retro_sara_735,
Tarsius syrichta ENSTSYG00000014537 ortholog_one2one 1 retrogene
retro_tsyr_225,
Tursiops truncatus ENSTTRG00000000859 ortholog_one2one 1 retrogene
retro_ttru_712,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_393 92.50 100.00
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2. retro_cjac_1650 65.09 51.50
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3. retro_cjac_2776 64.66 65.15
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Download FASTA sequences of all ENSCJAG00000006250 retrocopies