RetrogeneDB ID: | retro_sara_735 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_5486:101..525(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ITGB1BP1 | ||
Ensembl ID: | ENSSARG00000009799 | ||
Aliases: | None | ||
Description: | integrin beta 1 binding protein 1 [Source:HGNC Symbol;Acc:23927] |
Percent Identity: | 54.05 % |
Parental protein coverage: | 81.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | SDTCAEFRIKYVGAIEKLRLSEGESLEGPL-DLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSD |
S...AEF.....GAI.KL.LS..E...G...DLINY.DV.QQ..KLPFVPLE............KV..S. | |
Retrocopy | SESYAEFLVRWIGAIWKLKLSKEEKSGGHQ<DLINYTDVFQQSEKLPFVPLE-NLLWEFASMALKVPASG |
Parental | QYDVLHRHALYLII-RMVCYDDGLG-AGKSLLALKTTDASNEECSLWVYQCHSLEQAQA-ICKVLSTAFD |
Q.DV.HRHAL.L...RMVC..DG.G.AG.SLLALK.T.ASNEE..L..YQC..LEQA...IC.VL..... | |
Retrocopy | QDDVSHRHALCLTT<RMVC-SDGTG>AGQSLLALKSTEASNEESNLGAYQCSYLEQAET>ICEVLASTLS |
Parental | SVL-TSEK |
..L.TSEK | |
Retrocopy | CIL>TSEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000013063 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000013602 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000006250 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008930 | 3 retrocopies | |
Homo sapiens | ENSG00000119185 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001754 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006761 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002359 | 7 retrocopies | |
Myotis lucifugus | ENSMLUG00000010629 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000018036 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013322 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003726 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001679 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000005976 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012667 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011637 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009799 | 1 retrocopy |
retro_sara_735 ,
|
Tarsius syrichta | ENSTSYG00000014537 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000859 | 1 retrocopy |