RetrogeneDB ID: | retro_chof_1385 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_277944:675..1273(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ITGB1BP1 | ||
Ensembl ID: | ENSCHOG00000013602 | ||
Aliases: | None | ||
Description: | integrin beta 1 binding protein 1 [Source:HGNC Symbol;Acc:23927] |
Percent Identity: | 75.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | MFRKGK-KRNSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTESTKSSGQSNNNSDTCAEFRIKYVG |
MF.KGK.K..SSSSSQS.E...KSKSVDSSLG.LS.SSTVASLDT.STKSSGQSN.NSDTCAEF.IKY.G | |
Retrocopy | MFWKGK<K*HSSSSSQSNEVGSKSKSVDSSLGRLS*SSTVASLDTDSTKSSGQSNKNSDTCAEF*IKYIG |
Parental | AIEKLKVSEGKSLEGPLELINYIDVAQQEGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLII |
.IEKLKVSEG.SLEGPL.L.NYIDVAQ..GKLPFVPLEEEF.MG.SKYGIKVS.S...DVLHRHALYLII | |
Retrocopy | TIEKLKVSEGGSLEGPLDLTNYIDVAQLDGKLPFVPLEEEFNMGASKYGIKVSISGKCDVLHRHALYLII |
Parental | RMVCYDDGLG-AG-KSLLALKTTDASNEEYSLWVYQCNSLEEAQ-VICKVLS-TAFDSVLSSKKS |
.MVC..DG.G.AG.KS..ALKTTDA..EEYSL..YQCNSL..AQ..IC..LS...FDS.LS..KS | |
Retrocopy | QMVC-*DGVG<AGKKSSPALKTTDACSEEYSL*IYQCNSLVQAQ>LICNILS<LCFDSLLSYQKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000013063 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000013602 | 2 retrocopies |
retro_chof_1385 , retro_chof_432,
|
Callithrix jacchus | ENSCJAG00000006250 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008930 | 3 retrocopies | |
Homo sapiens | ENSG00000119185 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001754 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006761 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002359 | 7 retrocopies | |
Myotis lucifugus | ENSMLUG00000010629 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000018036 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013322 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003726 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001679 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000005976 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012667 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011637 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009799 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014537 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000859 | 1 retrocopy |