RetrogeneDB ID:

retro_mmur_244

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_1967:911609..912209(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ITGB1BP1
Ensembl ID:ENSMICG00000002359
Aliases:None
Description:integrin beta 1 binding protein 1 [Source:HGNC Symbol;Acc:23927]


Retrocopy-Parental alignment summary:






>retro_mmur_244
ATGTTTCAGAAAGGCAAAAAACGATACAGCAGTAGCAGTTCCAAAAGTAGTGAAATCAGTACTAAAAGCAAGTCTGTAGA
TTCTAGCCTTGGGGGTCTTTCCCGATCCAGCACTGTGGCCAGCCTTGGTACAGATTCCACCAGAAGCTCAGGACAAAGCA
ACAGTCATTCAGATACCTGTGCGGAATTTCGAATACAATATGTTGGTGCCATTGAGAAGCTGAAACTCTCTGAGGGGAAA
TGTCTGGAAGGGCCACTAGACGTGATAAATTACATAGATGTTGCCCAGCAAGATGGAAAGTTGCCTTTTGTTCCTCTGGA
GGAAGAATTTATTATGGGAGTTTCCAAGTATGGTATAAAAGTGTCAACATCAGATCAGTATGATGTTTTGCACAGGCATG
CTCTATATTTAATCATCCTGATGGTGTGTTATGATGATGGTCTGGGGGCAGGAAAAAGCTTATTGGCTCTGAAGACCACA
GATGCGAGCAATGAAGAATGCAGCCTGTGGGTTTATCAGTGCAACAGCCTGGAACAAGCACAAGCAATTTGCAAAGTTTT
ATCCACTGCTTTTGACTCCGTATTAATATCTGAGAAATCT

ORF - retro_mmur_244 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94. %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGA
MF.KGKKR.SSSSS.SSEISTKSKSVDSSLGGLSRSSTVASL.TDST.SSGQSN..SDTCAEFRI.YVGA
RetrocopyMFQKGKKRYSSSSSKSSEISTKSKSVDSSLGGLSRSSTVASLGTDSTRSSGQSNSHSDTCAEFRIQYVGA
ParentalIEKLKLSEGKCLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIR
IEKLKLSEGKCLEGPLD.INYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLII.
RetrocopyIEKLKLSEGKCLEGPLDVINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIL
ParentalMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVLTSEKS
MVCYDDGLGAGKSLLALKTTDASNEE.SLWVYQCNSLEQAQAICKVLSTAFDSVL.SEKS
RetrocopyMVCYDDGLGAGKSLLALKTTDASNEECSLWVYQCNSLEQAQAICKVLSTAFDSVLISEKS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_244 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_244 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 35 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000130632 retrocopies
Choloepus hoffmanni ENSCHOG000000136022 retrocopies
Callithrix jacchus ENSCJAG000000062503 retrocopies
Dasypus novemcinctus ENSDNOG000000089303 retrocopies
Homo sapiens ENSG000001191851 retrocopy
Gorilla gorilla ENSGGOG000000017541 retrocopy
Macropus eugenii ENSMEUG000000067611 retrocopy
Microcebus murinus ENSMICG00000002359 7 retrocopies
Myotis lucifugus ENSMLUG000000106292 retrocopies
Macaca mulatta ENSMMUG000000180361 retrocopy
Nomascus leucogenys ENSNLEG000000133221 retrocopy
Oryctolagus cuniculus ENSOCUG000000037261 retrocopy
Otolemur garnettii ENSOGAG000000016794 retrocopies
Procavia capensis ENSPCAG000000059761 retrocopy
Pongo abelii ENSPPYG000000126671 retrocopy
Pan troglodytes ENSPTRG000000116371 retrocopy
Sorex araneus ENSSARG000000097991 retrocopy
Tarsius syrichta ENSTSYG000000145371 retrocopy
Tursiops truncatus ENSTTRG000000008591 retrocopy



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