Parental gene:

LAMTOR3, ENSCAFG00000029975

Aliases:None
Description:late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 [Source:HGNC Symbol;Acc:15606]
Organism:Dog (Canis familiaris)
Coordinates:32:21817818..21833979(-)


>ENSCAFG00000029975
ATGGCGGATGACCTAAAGCGATTCCTGTATAAAAAATTACCAAGTGTTGAAGGGCTCCATGCTATTGTTGTGTCAGATAG
AGATGGAGTCCCCGTTATTAAAGTGGCCAATGATAATGCTCCAGAGCATGCTTTGAGACCTGGTTTCTTATCTACTTTTG
CCCTTGCAACAGACCAAGGGAGCAAACTTGGTCTTTCAAAAAATAAAAGTATCATCTGTTACTATAACACCTACCAGGTG
GTTCAATTCAATCGTTTACCTTTGGTGGTGAGTTTCATAGCCAGCAGCAATGCCAATACAGGACTCATTGTCAGCCTAGA
AAAGGAACTTGCTCCGTTATTTGAAGAATTGAGACAAGTGGTGGAAGTTTCTTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 20 .54 RPM
SRP017611_brain 20 .88 RPM
SRP017611_kidney 41 .34 RPM
SRP017611_liver 7 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007923 ortholog_one2one 1 retrogene
retro_btau_578,
Choloepus hoffmanni ENSCHOG00000013153 ortholog_one2one 7 retrogenes
retro_chof_1167, retro_chof_1236, retro_chof_1266, retro_chof_1536, retro_chof_166, retro_chof_1929, retro_chof_955,
Callithrix jacchus ENSCJAG00000015196 ortholog_one2one 4 retrogenes
retro_cjac_1149, retro_cjac_1821, retro_cjac_2581, retro_cjac_2786,
Cavia porcellus ENSCPOG00000013304 possible_ortholog 2 retrogenes
retro_cpor_112, retro_cpor_208,
Echinops telfairi ENSETEG00000009065 ortholog_one2one 6 retrogenes
retro_etel_1271, retro_etel_1421, retro_etel_1621, retro_etel_1639, retro_etel_471, retro_etel_794,
Homo sapiens ENSG00000109270 ortholog_one2one 2 retrogenes
retro_hsap_1190, retro_hsap_3374,
Gorilla gorilla ENSGGOG00000001132 ortholog_one2one 2 retrogenes
retro_ggor_2283, retro_ggor_928,
Monodelphis domestica ENSMODG00000020688 ortholog_one2one 3 retrogenes
retro_mdom_1133, retro_mdom_455, retro_mdom_907,
Mustela putorius furo ENSMPUG00000009569 ortholog_one2one 2 retrogenes
retro_mputfur_590, retro_mputfur_877,
Mus musculus ENSMUSG00000091512 ortholog_one2many 1 retrogene
retro_mmus_167,
Nomascus leucogenys ENSNLEG00000013684 ortholog_one2one 2 retrogenes
retro_nleu_1936, retro_nleu_965,
Otolemur garnettii ENSOGAG00000005336 ortholog_one2one 4 retrogenes
retro_ogar_2081, retro_ogar_2120, retro_ogar_3435, retro_ogar_451,
Pongo abelii ENSPPYG00000014955 ortholog_one2one 3 retrogenes
retro_pabe_1268, retro_pabe_2772, retro_pabe_991,
Pan troglodytes ENSPTRG00000016310 ortholog_one2one 1 retrogene
retro_ptro_2294,
Pteropus vampyrus ENSPVAG00000017674 ortholog_one2one 1 retrogene
retro_pvam_1378,
Rattus norvegicus ENSRNOG00000010552 ortholog_one2one 1 retrogene
retro_rnor_2341,
Sus scrofa ENSSSCG00000009176 ortholog_one2one 1 retrogene
retro_sscr_148,
Tupaia belangeri ENSTBEG00000003682 ortholog_one2one 6 retrogenes
retro_tbel_1932, retro_tbel_2172, retro_tbel_230, retro_tbel_3358, retro_tbel_4521, retro_tbel_924,
Tursiops truncatus ENSTTRG00000015015 ortholog_one2one 1 retrogene
retro_ttru_809,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_692 69.81 83.87
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2. retro_cfam_700 82.28 63.71
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3. retro_cfam_1425 75.95 63.71
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Download FASTA sequences of all ENSCAFG00000029975 retrocopies