RetrogeneDB ID: | retro_cfam_1425 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 30:39541700..39541937(-) | ||
Located in intron of: | ENSCAFG00000018100 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LAMTOR3 | ||
Ensembl ID: | ENSCAFG00000029975 | ||
Aliases: | None | ||
Description: | late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 [Source:HGNC Symbol;Acc:15606] |
Percent Identity: | 75.95 % |
Parental protein coverage: | 63.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSNANTGLIVSLEKELAPLFE |
R.GFL..FA.ATDQG.KLGLSKNK.I.CY.NTYQV.QFN.L.LV.SF.A.SN.N.GLIVSLEKEL..LFE | |
Retrocopy | RRGFLPSFAPATDQGGKLGLSKNKNITCYCNTYQVFQFNDLLLVPSFLACSNGNKGLIVSLEKELVLLFE |
Parental | ELRQVVEVS |
ELRQ.VEVS | |
Retrocopy | ELRQIVEVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 20 .54 RPM |
SRP017611_brain | 0 .00 RPM | 20 .88 RPM |
SRP017611_kidney | 0 .00 RPM | 41 .34 RPM |
SRP017611_liver | 0 .00 RPM | 7 .32 RPM |