RetrogeneDB ID: | retro_mdom_907 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 2:392574594..392574966(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LAMTOR3 | ||
Ensembl ID: | ENSMODG00000020688 | ||
Aliases: | None | ||
Description: | late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 [Source:HGNC Symbol;Acc:15606] |
Percent Identity: | 88.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MADDLKRFLYKKLPSVEGLHAIVVSDRDGVPVIKVANDNAPEHALRPAFLSTFALATDQGSKLGLSKNKS |
M.DDLKRF.YKKLPSVEGLHAIVVSDRDGVPVI.VANDNAPE.ALRPAFLSTFALATDQGSKLGLSKNKS | |
Retrocopy | MMDDLKRFPYKKLPSVEGLHAIVVSDRDGVPVIQVANDNAPENALRPAFLSTFALATDQGSKLGLSKNKS |
Parental | IICYYNTYQVVQFNRLPLVVSFIASSSANTGLIVSLEKELAPLFEELRQVVEGS |
.ICY.N.YQVV.FNRLPLV..FIASSSANTGLIVSL.KEL.PLFEELRQ..EGS | |
Retrocopy | TICYCNAYQVVLFNRLPLVANFIASSSANTGLIVSL*KELTPLFEELRQAMEGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |