Parental gene:

LAMTOR3, ENSSSCG00000009176

Aliases:None
Description:late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 [Source:HGNC Symbol;Acc:15606]
Organism:Pig (Sus scrofa)
Coordinates:8:129804995..129822001(+)


>ENSSSCG00000009176
ATGGCGGATGACCTAAAACGATTCCTGTATAAAAAATTGCCAAGTGTTGAGGGGCTCCATGCTATTGTTGTGTCAGATAG
AGATGGCGTCCCCGTCATTAAAGTGGCCAATGATAATGCTCCAGAGCATGCTTTGAGACCTGGTTTTCTATCTACTTTTG
CCCTTGCAACAGATCAAGGGAGCAAACTTGGACTTTCAAAAAATAAAAGTATCATCTGTTACTATAATACCTACCAGGTG
GTTCAATTCAATCGTTTACCTTTGGTGGTGAGTTTCATAGCCAGCAGCAATGCCAATACAGGACTCATTGTCAGCCTAGA
AAAGGAACTTGCTCCATTATTTGAAGAATTGAGACAAGTTGTGGAAGTTTCTTAA

Library Parental gene expression (RPM)
SRP014902_placenta 9 .29 RPM
SRP014902_testis 11 .32 RPM
SRP018288_heart 21 .79 RPM
SRP018288_kidney 60 .38 RPM
SRP018288_liver 22 .07 RPM
SRP018288_lung 24 .54 RPM
SRP018856_adipose 12 .82 RPM
SRP035408_brain 31 .73 RPM
SRP035408_liver 18 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007923 ortholog_one2one 1 retrogene
retro_btau_578,
Canis familiaris ENSCAFG00000029975 ortholog_one2one 3 retrogenes
retro_cfam_1425, retro_cfam_692, retro_cfam_700,
Choloepus hoffmanni ENSCHOG00000013153 ortholog_one2one 7 retrogenes
retro_chof_1167, retro_chof_1236, retro_chof_1266, retro_chof_1536, retro_chof_166, retro_chof_1929, retro_chof_955,
Callithrix jacchus ENSCJAG00000015196 ortholog_one2one 4 retrogenes
retro_cjac_1149, retro_cjac_1821, retro_cjac_2581, retro_cjac_2786,
Cavia porcellus ENSCPOG00000013304 possible_ortholog 2 retrogenes
retro_cpor_112, retro_cpor_208,
Echinops telfairi ENSETEG00000009065 ortholog_one2one 6 retrogenes
retro_etel_1271, retro_etel_1421, retro_etel_1621, retro_etel_1639, retro_etel_471, retro_etel_794,
Homo sapiens ENSG00000109270 ortholog_one2one 2 retrogenes
retro_hsap_1190, retro_hsap_3374,
Gorilla gorilla ENSGGOG00000001132 ortholog_one2one 2 retrogenes
retro_ggor_2283, retro_ggor_928,
Monodelphis domestica ENSMODG00000020688 ortholog_one2one 3 retrogenes
retro_mdom_1133, retro_mdom_455, retro_mdom_907,
Mustela putorius furo ENSMPUG00000009569 ortholog_one2one 2 retrogenes
retro_mputfur_590, retro_mputfur_877,
Mus musculus ENSMUSG00000091512 ortholog_one2many 1 retrogene
retro_mmus_167,
Nomascus leucogenys ENSNLEG00000013684 ortholog_one2one 2 retrogenes
retro_nleu_1936, retro_nleu_965,
Otolemur garnettii ENSOGAG00000005336 ortholog_one2one 4 retrogenes
retro_ogar_2081, retro_ogar_2120, retro_ogar_3435, retro_ogar_451,
Pongo abelii ENSPPYG00000014955 ortholog_one2one 3 retrogenes
retro_pabe_1268, retro_pabe_2772, retro_pabe_991,
Pan troglodytes ENSPTRG00000016310 ortholog_one2one 1 retrogene
retro_ptro_2294,
Pteropus vampyrus ENSPVAG00000017674 ortholog_one2one 1 retrogene
retro_pvam_1378,
Rattus norvegicus ENSRNOG00000010552 ortholog_one2one 1 retrogene
retro_rnor_2341,
Tupaia belangeri ENSTBEG00000003682 ortholog_one2one 6 retrogenes
retro_tbel_1932, retro_tbel_2172, retro_tbel_230, retro_tbel_3358, retro_tbel_4521, retro_tbel_924,
Tursiops truncatus ENSTTRG00000015015 ortholog_one2one 1 retrogene
retro_ttru_809,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_148 72.62 66.13
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Download FASTA sequences of all ENSSSCG00000009176 retrocopies