Parental gene: | ZC3H15, ENSCJAG00000005931 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 6:101558085..101580305(+) |
>ENSCJAG00000005931
ATGCCCCCCAAGAAACAGGCTCAGGCCGGGGGCAGCAAAAAAGCGGAGCAGAAAAAGAAGGAGAAGATTATCGAAGACAA
AACTTTTGGTTTGAAGAATAAGAAAGGAGCAAAGCAACAGAAGTTTATCAAGGCTGTAACACATCAGGTTAAATTTGGTC
AACAAAATCCACGTCAGGTAGCACAGAGTGAAGCTGAAAAGAAATTGAAGAAGGATGACAAGAAGAAAGAATTGCAGGAG
CTAAATGAACTATTCAAACCTGTAGTTGCTGCTCAAAAAATAAGTAAAGGTGCAGATCCCAAGTCTGTGGTGTGTGCATT
CTTCAAGCAAGGACAGTGTACTAAAGGAGATAAGTGTAAGTTCTCTCATGACTTGACTCTAGAGAGAAAATGTGAAAAGC
GAAGTGTTTACATTGATGCAAGAGATGAAGAACTTGAAAAAGATACTATGGATAATTGGGATGAGAAAAAGCTGGAAGAA
GTAGTGAACAAGAAGCACGGTGAGGCGGAAAAGAAAAAACCAAAAACTCAAATAGTGTGCAAGCATTTCCTTGAAGCTAT
TGAAAACAACAAGTATGGCTGGTTTTGGGTATGCCCTGGCGGGGGTGATATTTGCATGTATCGTCATGCACTTCCTCCTG
GATTTGTGTTGAAAAAAGATAAAAAGAAAGAAGAGAAAGAAGATGAAATTTCGTTAGAAGATCTAATTGAAAGAGAGCGT
TCTGCCCTAGGTCCAAATGTTACCAAAATCACTCTAGAATCTTTTCTTGCGTGGAAGAAAAGGAAAAGACAAGAAAAGAT
TGATAAACTTGAACAAGACATGGAAAGAAGGAAAGCTGACTTCAAAGCAGGGAAAGCACTAGTGATCAGTGGTCGTGAAG
TGTTTGAATTTCGTCCTGAACTGGTCAATGATGATGATGAGGAAGCAGATGATACCCATTACACCCAGGGAACAGGTGGT
GATGAGGTTGATGATTCCGTGAGCATAAATGACATAGATTTAAGCCAGTACATCCCAAGAGATGTAGATGAAACAGGTAT
TACTGTAGCCAGTCTTGAAAGATTCAGCACATATACTTCCGATAAAGATGAAAACAAATTAAATGAAGCTTCTGGAGGTA
GGGCTGAAAATGGTGAAAGAAGTGACTTGGAAGAGGACAACGAAAGAGAGGGACCGGAAAATGGAGCTATTGATGCTGTT
CCTGTTGATGAAAATCTTTTCACTGGAGAGGATTTGGATGAACTAGAAGAAGAACTAAATACACTTGATTTAGAAGAATG
A
ATGCCCCCCAAGAAACAGGCTCAGGCCGGGGGCAGCAAAAAAGCGGAGCAGAAAAAGAAGGAGAAGATTATCGAAGACAA
AACTTTTGGTTTGAAGAATAAGAAAGGAGCAAAGCAACAGAAGTTTATCAAGGCTGTAACACATCAGGTTAAATTTGGTC
AACAAAATCCACGTCAGGTAGCACAGAGTGAAGCTGAAAAGAAATTGAAGAAGGATGACAAGAAGAAAGAATTGCAGGAG
CTAAATGAACTATTCAAACCTGTAGTTGCTGCTCAAAAAATAAGTAAAGGTGCAGATCCCAAGTCTGTGGTGTGTGCATT
CTTCAAGCAAGGACAGTGTACTAAAGGAGATAAGTGTAAGTTCTCTCATGACTTGACTCTAGAGAGAAAATGTGAAAAGC
GAAGTGTTTACATTGATGCAAGAGATGAAGAACTTGAAAAAGATACTATGGATAATTGGGATGAGAAAAAGCTGGAAGAA
GTAGTGAACAAGAAGCACGGTGAGGCGGAAAAGAAAAAACCAAAAACTCAAATAGTGTGCAAGCATTTCCTTGAAGCTAT
TGAAAACAACAAGTATGGCTGGTTTTGGGTATGCCCTGGCGGGGGTGATATTTGCATGTATCGTCATGCACTTCCTCCTG
GATTTGTGTTGAAAAAAGATAAAAAGAAAGAAGAGAAAGAAGATGAAATTTCGTTAGAAGATCTAATTGAAAGAGAGCGT
TCTGCCCTAGGTCCAAATGTTACCAAAATCACTCTAGAATCTTTTCTTGCGTGGAAGAAAAGGAAAAGACAAGAAAAGAT
TGATAAACTTGAACAAGACATGGAAAGAAGGAAAGCTGACTTCAAAGCAGGGAAAGCACTAGTGATCAGTGGTCGTGAAG
TGTTTGAATTTCGTCCTGAACTGGTCAATGATGATGATGAGGAAGCAGATGATACCCATTACACCCAGGGAACAGGTGGT
GATGAGGTTGATGATTCCGTGAGCATAAATGACATAGATTTAAGCCAGTACATCCCAAGAGATGTAGATGAAACAGGTAT
TACTGTAGCCAGTCTTGAAAGATTCAGCACATATACTTCCGATAAAGATGAAAACAAATTAAATGAAGCTTCTGGAGGTA
GGGCTGAAAATGGTGAAAGAAGTGACTTGGAAGAGGACAACGAAAGAGAGGGACCGGAAAATGGAGCTATTGATGCTGTT
CCTGTTGATGAAAATCTTTTCACTGGAGAGGATTTGGATGAACTAGAAGAAGAACTAAATACACTTGATTTAGAAGAATG
A
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 26 .66 RPM |
| SRP051959_skeletal_muscle | 15 .05 RPM |
| SRP051959_lymph_node | 26 .73 RPM |
| SRP051959_lung | 23 .83 RPM |
| SRP051959_liver | 25 .08 RPM |
| SRP051959_kidney | 31 .64 RPM |
| SRP051959_heart | 15 .49 RPM |
| SRP051959_colon | 20 .86 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000021762 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000011958 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000012965 | ortholog_one2one | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000011664 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000001563 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000027565 | ortholog_one2many | 5 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000011903 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000002182 | ortholog_one2one | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000015790 | ortholog_one2many | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000012717 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000005256 | ortholog_one2many | 4 retrogenes | |
| Sorex araneus | ENSSARG00000012071 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2883 | 92.28 | 64.90 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3986 | 81.06 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000005931 retrocopies