Parental gene:

ZC3H15, ENSPTRG00000012717

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:2B:191091214..191114685(+)


>ENSPTRG00000012717
ATGCCCCCCAAGAAACAGGCTCAGGCCGGGGGCAGCAAAAAGGCGGAGCAAAAAAAGAAGGAGAAGATTATCGAAGACAA
AACTTTCGGTTTGAAGAATAAGAAAGGAGCAAAGCAACAGAAGTTTATCAAGGCTGTCACACATCAAGTTAAATTTGGTC
AACAAAATCCACGTCAGGTAGCACAGAGTGAAGCTGAAAAGAAATTGAAGAAGGATGACAAGAAGAAAGAATTGCAGGAG
CTAAATGAGCTGTTCAAACCTGTAGTTGCTGCTCAAAAAATAAGTAAAGGTGCAGATCCCAAGTCTGTAGTATGTGCATT
CTTCAAGCAAGGACAGTGTACTAAAGGAGATAAGTGTAAGTTCTCCCATGACTTGACTCTGGAGAGAAAATGTGAAAAGC
GAAGTGTTTACATTGATGCAAGAGATGAAGAACTTGAAAAAGATACTATGGATAATTGGGATGAGAAAAAGCTGGAAGAA
GTAGTGAACAAGAAGCACGGTGAGGCGGAAAAGAAAAAACCAAAAACTCAAATAGTGTGCAAGCATTTCCTGGAAGCTAT
TGAAAACAACAAGTATGGCTGGTTTTGGGTATGCCCTGGAGGGGGTGATATTTGCATGTATCGTCATGCACTTCCTCCTG
GATTTGTGTTGAAAAAAGATAAAAAGAAAGAAGAGAAAGAAGATGAAATTTCATTAGAAGATCTAATTGAGAGAGAGCGT
TCTGCCCTAGGTCCAAATGTTACCAAAATCACTCTAGAATCTTTTCTTGCCTGGAAGAAAAGGAAAAGACAAGAAAAGAT
TGATAAACTTGAACAAGATATGGAAAGAAGGAAAGCTGACTTCAAAGCAGGGAAAGCACTAGTGATCAGTGGTCGTGAAG
TGTTTGAATTTCGTCCTGAACTGGTCAATGATGATGATGAGGAAGCAGATGATACCCGCTACACCCAGGGAACAGGTGGT
GATGAGGTTGATGATTCAGTGAGTGTAAATGACATAGATTTAAGCCTGTACATCCCAAGAGATGTAGATGAAACAGGTAT
TACCGTAGCCAGTCTTGAAAGATTCAGCACATATACTTCAGATAAAGATGAAAACAAATTAAGTGAAGCTTCTGGAGGTA
GGGCTGAAAATGGTGAAAGAAGTGACTTGGAAGAGGACAACGAGAGGGAGGGACCGGAAAATGGAGCCATTGATGCTGTT
CCTGTTGATGAAAATCTTTTCACTGGAGAGGATTTGGATGAACTAGAAGAAGAATTAAATACACTTGATTTAGAAGAATG
A

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 32 .10 RPM
SRP007412_cerebellum 23 .44 RPM
SRP007412_heart 16 .44 RPM
SRP007412_kidney 21 .68 RPM
SRP007412_liver 15 .32 RPM
SRP007412_testis 34 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021762 ortholog_one2one 1 retrogene
retro_btau_1223,
Choloepus hoffmanni ENSCHOG00000011958 ortholog_one2one 1 retrogene
retro_chof_2120,
Callithrix jacchus ENSCJAG00000005931 ortholog_one2one 2 retrogenes
retro_cjac_2883, retro_cjac_3986,
Cavia porcellus ENSCPOG00000012965 ortholog_one2one 2 retrogenes
retro_cpor_1294, retro_cpor_919,
Dipodomys ordii ENSDORG00000011664 ortholog_one2one 1 retrogene
retro_dord_666,
Loxodonta africana ENSLAFG00000001563 possible_ortholog 1 retrogene
retro_lafr_941,
Monodelphis domestica ENSMODG00000027565 ortholog_one2many 5 retrogenes
retro_mdom_1230, retro_mdom_1321, retro_mdom_1744, retro_mdom_1942, retro_mdom_871,
Oryctolagus cuniculus ENSOCUG00000011903 ortholog_one2one 1 retrogene
retro_ocun_886,
Otolemur garnettii ENSOGAG00000002182 ortholog_one2one 2 retrogenes
retro_ogar_1093, retro_ogar_611,
Ochotona princeps ENSOPRG00000015790 ortholog_one2many 2 retrogenes
retro_opri_169, retro_opri_609,
Rattus norvegicus ENSRNOG00000005256 ortholog_one2many 4 retrogenes
retro_rnor_2628, retro_rnor_284, retro_rnor_662, retro_rnor_925,
Sorex araneus ENSSARG00000012071 ortholog_one2one 1 retrogene
retro_sara_363,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_348 94.13 100.00
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Download FASTA sequences of all ENSPTRG00000012717 retrocopies