Parental gene:

ZC3H15, ENSOGAG00000002182

Aliases:None
Description:zinc finger CCCH-type containing 15 [Source:HGNC Symbol;Acc:29528]
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873567.1:437934..460567(-)


>ENSOGAG00000002182
ATGCCCCCCAAGAAACAGGCTCAGGCCGGGGGCAGTAAAAAGGCGGAGCAGAAAAAGAAGGAGAAGATTATCGAAGACAA
AACTTTTGGTTTAAAGAATAAGAAAGGAGCAAAGCAACAAAAGTTTATCAAGGCTGTCACCCATCAAGTTAAATTTGGTC
AACAAAATCCACGTCAGGTAGCACAGAGTGAAGCTGAAAAGAAATTGAAGAAAGATGACAAGAAGAAAGAATTGCAGGAA
CTAAATGAGCTGTTCAAACCTGTAGTTGCTGCTCAAAAAATAAGTAAAGGTGCAGATCCCAAATCCGTGGTGTGTGCATT
CTTCAAGCAAGGACAATGTACTAAAGGAGATAAGTGTAAGTTTTCTCATGACTTGACTCTGGAGAGAAAATGTGAAAAGA
GAAGTGTTTACATTGATGCAAGAGATGAAGAACTTGAAAAAGATACTATGGATAATTGGGATGAGAAAAAGCTGGAAGAA
GTAGTGAACAAGAAGCACGGTGAGGCGGAAAAGAAAAAACCAAAAACTCAAATAGTATGCAAGCATTTCCTTGAAGCCAT
TGAAAACAACAAATATGGCTGGTTTTGGGTATGCCCTGGAGGGGGTGATATTTGCATGTACCGTCATGCACTTCCTCCTG
GATTTGTGTTGAAAAAAGATAAAAAGAAAGAAGAAAAAGAAGATGAAATTTCATTAGAAGATCTCATTGAAAGAGAGCGT
TCTGCCCTAGGTCCAAACGTTACCAAAATCACTCTAGAATCTTTTCTTGCATGGAAGAAAAGGAAAAGACAAGAGAAAAT
TGATAAACTTGAACAAGATATGGAAAGAAGGAAAGCAGACTTCAAAGCAGGGAAAGCATTAGTGATCAGCGGCCGAGAAG
TGTTTGAATTTCGTCCTGAGCTGGTCAATGATGATGATGAGGAAGCGGATGACACCCGGTATACCCAGGGAACAGGTGGT
GATGAGTTAAAGGTTGATGATTCAGTAAGTGTAAATGACATAGATTTAAGCCTATATATCCCAAGAGATGTAGATGAAAC
AGGTATTACTGTAGCCAGTCTTGAAAGATTCAGCACATATGCTTCAGATAAAGATGAAAATAAATTAAGTGAAGCCTCTG
GAGGTAGGGCTGAAAATGGTGAAAAAAGTGACTTGGAAGAGGACAATGAAGCTGAGGGACAGGAAAATGGAGCCATCGAT
GCCGTTCCTGTTGATGAAAATCTTTTTACTGGGGAAGATTTGGATGAACTAGAAGAAGAATTAAACACACTTGATTTAGA
AGAATGA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021762 ortholog_one2one 1 retrogene
retro_btau_1223,
Choloepus hoffmanni ENSCHOG00000011958 ortholog_one2one 1 retrogene
retro_chof_2120,
Callithrix jacchus ENSCJAG00000005931 ortholog_one2one 2 retrogenes
retro_cjac_2883, retro_cjac_3986,
Cavia porcellus ENSCPOG00000012965 ortholog_one2one 2 retrogenes
retro_cpor_1294, retro_cpor_919,
Dipodomys ordii ENSDORG00000011664 ortholog_one2one 1 retrogene
retro_dord_666,
Loxodonta africana ENSLAFG00000001563 possible_ortholog 1 retrogene
retro_lafr_941,
Monodelphis domestica ENSMODG00000027565 ortholog_one2many 5 retrogenes
retro_mdom_1230, retro_mdom_1321, retro_mdom_1744, retro_mdom_1942, retro_mdom_871,
Oryctolagus cuniculus ENSOCUG00000011903 ortholog_one2one 1 retrogene
retro_ocun_886,
Ochotona princeps ENSOPRG00000015790 ortholog_one2many 2 retrogenes
retro_opri_169, retro_opri_609,
Pan troglodytes ENSPTRG00000012717 ortholog_one2one 1 retrogene
retro_ptro_348,
Rattus norvegicus ENSRNOG00000005256 ortholog_one2many 4 retrogenes
retro_rnor_2628, retro_rnor_284, retro_rnor_662, retro_rnor_925,
Sorex araneus ENSSARG00000012071 ortholog_one2one 1 retrogene
retro_sara_363,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ogar_611 68.03 73.83
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2. retro_ogar_1093 83.59 74.53
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Download FASTA sequences of all ENSOGAG00000002182 retrocopies