Parental gene:

PEF1, ENSCJAG00000006355

Aliases:PEF1, peflin
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:65831548..65847013(-)


>ENSCJAG00000006355
ATGGCCAGCTATCCCTACCGGCAGGGCTGCCCAGGAGCTTCAGGACAAGCACCAGGAGCCCCTCCGGGTAGCTACTACCC
TGGACCCCTCAATAGTGGAGGGCAGTATGGCAGCGGGCTACCCCCTGGTGGTGGTTATGGGGGTCCTGCCCCTGGAGGAC
CTTATGGACCACCAGCTGGTGGAGCGCCCTATGGACACCCCAATCCTGGGATGTTCCCCTCCGGAACTCCAGGAGGACCA
TATGGCGGTGCAGCTCCAGGGGGCCCCTATGGTCAGCCACCTCCAAATTCCTATGGTGCCCAGCAGCCTGGGCCTTATGG
ACAGGGTGGCGCCCCTCCCAATGTGGATCCTGAGGCTTACTCCTGGTTCCAGTCAGTGGACTCCGATCACAGTGGCTATA
TCTCCATGAAAGAGCTGAAGCAAGCCCTGGTCAACTGCAATTGGTCCTCGTTCAATGATGAGACCTGCCTCATGATGATA
AACATGTTTGACAAGACTAAGTCAGGCCGCATCGATGTCTACGGCTTCTCAGCCCTGTGGAAATTCATCCAGCAGTGGAA
GAACCTGTTCCAGCAATATGACCGGGACCGCTCGGGCTCCATTAGCTACACAGAGCTGCAGCAAGCTCTGTCCCAAATGG
GCTACAACCTGAGCCCCCAGTTCACCCAGCTTCTGGTCTCCCGCTACTGCCCACGCTCTGCCAATCCTGCCATGCAGCTT
GACCGCTTCATCCAGGTGTGCACCCAGCTGCAGGTGCTGACGGAGGCCTTCCGGGAGAAGGACACAGCTGTACAAGGCAA
CATTCGGCTCAGCTTCGAGGACTTCGTCACCATGACAGCTTCTCGGATGCTATGA

Library Parental gene expression (RPM)
SRP051959_spleen 10 .23 RPM
SRP051959_skeletal_muscle 9 .87 RPM
SRP051959_lymph_node 9 .43 RPM
SRP051959_lung 13 .65 RPM
SRP051959_liver 11 .74 RPM
SRP051959_kidney 18 .55 RPM
SRP051959_heart 10 .70 RPM
SRP051959_colon 12 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000162517 ortholog_one2one 1 retrogene
retro_hsap_497,
Gorilla gorilla ENSGGOG00000015897 ortholog_one2one 1 retrogene
retro_ggor_464,
Macropus eugenii ENSMEUG00000014458 ortholog_one2one 1 retrogene
retro_meug_375,
Microcebus murinus ENSMICG00000001374 ortholog_one2one 1 retrogene
retro_mmur_937,
Macaca mulatta ENSMMUG00000023397 ortholog_one2many 1 retrogene
retro_mmul_146,
Monodelphis domestica ENSMODG00000017573 ortholog_one2one 1 retrogene
retro_mdom_1930,
Nomascus leucogenys ENSNLEG00000001979 ortholog_one2one 1 retrogene
retro_nleu_2422,
Oryctolagus cuniculus ENSOCUG00000005744 ortholog_one2one 1 retrogene
retro_ocun_461,
Pongo abelii ENSPPYG00000001611 ortholog_one2one 1 retrogene
retro_pabe_238,
Pan troglodytes ENSPTRG00000000463 ortholog_one2one 1 retrogene
retro_ptro_375,
Rattus norvegicus ENSRNOG00000013972 ortholog_one2one 2 retrogenes
retro_rnor_1563, retro_rnor_2505,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1745 72.67 56.69
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Download FASTA sequences of all ENSCJAG00000006355 retrocopies