Parental gene:

PEF1, ENSOCUG00000005744

Aliases:None
Description:penta-EF-hand domain containing 1 [Source:HGNC Symbol;Acc:30009]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018704:6493821..6510386(+)


>ENSOCUG00000005744
ATGAAGCCCCGCCCCTCGTTGACGTGTGACGTCATAGTCGCCATGGCGAGCTATCCGTACGGGCAGGGCTGCCCAGGAGC
CGCAGGACAAGCGCCCGGAGCCCCTCCTGGTAGCTACTACCCTGGACCCACAGGAGGACAGTATGGCAGTGGGCTCCCCC
CCGGAGGTGGTTATGGGGGTCCTGCCCCTGGAGGACCTTATGGACCACCAGCTGGGGGAGGGCCCTATGGGGGCATCCCC
CCTGGAACTCCAGGAGGGCCGTATGGTGGTGCAGCCCCAGGAAGTCCCTATGGACCACCACCTCCAAGTGCCTATGGTGC
CCAGCAGCCCGGGCCTTATGGACAGGGTGGCGCCCCTCCCGGTGTAGATCCTGAGGCCTACTCCTGGTTCCAGTCGGTGG
ACTCTGATCACAGTGGTTACATTTCCATCAAGGAGCTAAAGCAGGCTCTGGTCAACTCCAACTGGTCTTCGTTCAATGAT
GAGACATGCCTCATGATGATAAACATGTTTGACAAGACCAAGTCAGGCCGCATCGACGTCTACGGGTTCTCAGCCCTGTG
GAAGTTCATCCAGCAGTGGAAGAACCTCTTCCAGCAGTATGACCGGGACCACTCGGGCTCCATCAGCTACACGGAGCTGC
AGCAAGCTCTGTCCCAGATGGGCTACAACCTGAGCCCCCAGTTCACCCAGCTTCTGGTCTCCCGCTACTGCCCGCGTTCT
GCCAGTCCCGCTATGCAACTTGACCGCTTCATCCAGGTGTGCACTCAGCTGCAGGTGCTGACTGAGGCCTTCCGGGAGAA
GGACACCGCCGTACAGGGCAACATTCGGCTCAGCTTTGAGGACTTCGTTACCATGACAGCCTCTCGGATGCTATGA

Library Parental gene expression (RPM)
SRP017611_brain 37 .03 RPM
SRP017611_kidney 32 .23 RPM
SRP017611_liver 11 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000006355 ortholog_one2one 1 retrogene
retro_cjac_1745,
Homo sapiens ENSG00000162517 ortholog_one2one 1 retrogene
retro_hsap_497,
Gorilla gorilla ENSGGOG00000015897 ortholog_one2one 1 retrogene
retro_ggor_464,
Macropus eugenii ENSMEUG00000014458 ortholog_one2one 1 retrogene
retro_meug_375,
Microcebus murinus ENSMICG00000001374 ortholog_one2one 1 retrogene
retro_mmur_937,
Macaca mulatta ENSMMUG00000023397 ortholog_one2many 1 retrogene
retro_mmul_146,
Monodelphis domestica ENSMODG00000017573 ortholog_one2one 1 retrogene
retro_mdom_1930,
Nomascus leucogenys ENSNLEG00000001979 ortholog_one2one 1 retrogene
retro_nleu_2422,
Oryctolagus cuniculus ENSOCUG00000002868 within_species_paralog 2 retrogenes
retro_ocun_1786, retro_ocun_741,
Pongo abelii ENSPPYG00000001611 ortholog_one2one 1 retrogene
retro_pabe_238,
Pan troglodytes ENSPTRG00000000463 ortholog_one2one 1 retrogene
retro_ptro_375,
Rattus norvegicus ENSRNOG00000013972 ortholog_one2one 2 retrogenes
retro_rnor_1563, retro_rnor_2505,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_461 91.06 61.51
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Download FASTA sequences of all ENSOCUG00000005744 retrocopies