RetrogeneDB ID: | retro_pabe_238 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:45684695..45685542(+) | ||
Located in intron of: | ENSPPYG00000000315 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PEF1 | ||
Ensembl ID: | ENSPPYG00000001611 | ||
Aliases: | None | ||
Description: | penta-EF-hand domain containing 1 [Source:HGNC Symbol;Acc:30009] |
Percent Identity: | 84.56 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MASYPYRQGCPGAAGQAPGAPPGSYYPGPPSSGGQYGSGLPPGGGYGGPAPGGPYGPPAGGGPYGHPNPG |
MASY.Y.QGCPG.AGQAPG.PPGSYY.GPP.SGGQYGS.LPPGGGYG.PAPGGPYGPPA..GPYGH.NPG | |
Retrocopy | MASYLYGQGCPGDAGQAPGTPPGSYYLGPPNSGGQYGSMLPPGGGYGDPAPGGPYGPPASRGPYGHLNPG |
Parental | MFPSGTPGGPYGGAAPGGPYGQPPPSSYGAQQPGLYGQGGAPPNVDPEAYSWFQSVDSDHSGYISMKELK |
MFPSGTPGGP....APGGPYGQPPP.SYGAQQP...GQGG.PPN.D.EAYSWFQSV..D.SG.ISMKE.K | |
Retrocopy | MFPSGTPGGPNDCTAPGGPYGQPPPNSYGAQQPRPHGQGGSPPNMD-EAYSWFQSV-TDYSGFISMKEVK |
Parental | QALVNCNWSSFNDETCLMMINMFDKTKSGRIDVYGFSALWKFIQQWKNLFQQ-YDRDRSGSISYTELQQA |
QALVNCNWS.FNDETCLM.INMFDKT.SG.I.VYGFSALWKFIQQWK.LF.Q.YDR..SGSISYTELQQA | |
Retrocopy | QALVNCNWSLFNDETCLMTINMFDKT*SGHINVYGFSALWKFIQQWKQLF*Q>YDRNNSGSISYTELQQA |
Parental | LSQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMT |
LSQMGYNLSPQFTQLLVS.YCPRS.NPA.QLD.FIQVCTQLQV.TEAFREKDTAVQGNIRLSF.D.VTMT | |
Retrocopy | LSQMGYNLSPQFTQLLVSSYCPRSVNPARQLDCFIQVCTQLQVPTEAFREKDTAVQGNIRLSFKDVVTMT |
Parental | ASRML |
ASRML | |
Retrocopy | ASRML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 52 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 43 .53 RPM |
SRP007412_heart | 0 .09 RPM | 15 .98 RPM |
SRP007412_kidney | 0 .07 RPM | 35 .73 RPM |
SRP007412_liver | 0 .09 RPM | 37 .61 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_497 |
Pan troglodytes | retro_ptro_375 |
Gorilla gorilla | retro_ggor_464 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006355 | 1 retrocopy | |
Homo sapiens | ENSG00000162517 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015897 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014458 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001374 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023397 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017573 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001979 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005744 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001611 | 1 retrocopy |
retro_pabe_238 ,
|
Pan troglodytes | ENSPTRG00000000463 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013972 | 2 retrocopies |