Parental gene:

PEF1, ENSPPYG00000001611

Aliases:None
Description:penta-EF-hand domain containing 1 [Source:HGNC Symbol;Acc:30009]
Organism:Orangutan (Pongo abelii)
Coordinates:1:198612718..198628044(+)


>ENSPPYG00000001611
ATGGCCAGCTATCCGTACCGGCAGGGCTGCCCAGGAGCTGCAGGACAAGCACCAGGAGCCCCTCCGGGTAGCTACTACCC
TGGACCCCCCAGTAGTGGAGGGCAGTATGGTAGTGGGCTACCCCCTGGTGGTGGTTATGGGGGTCCTGCCCCTGGAGGGC
CTTATGGACCACCAGCTGGTGGAGGGCCCTATGGACACCCCAATCCTGGGATGTTCCCCTCTGGAACTCCAGGAGGACCA
TATGGCGGTGCAGCTCCAGGGGGCCCCTATGGTCAGCCACCTCCAAGTTCCTACGGTGCCCAGCAGCCTGGGCTTTATGG
ACAGGGTGGCGCCCCTCCCAATGTGGATCCTGAGGCCTACTCCTGGTTCCAGTCGGTGGACTCAGATCACAGTGGCTATA
TCTCCATGAAGGAGCTAAAGCAGGCCCTGGTCAACTGCAATTGGTCCTCATTCAATGATGAGACCTGCCTCATGATGATA
AACATGTTTGACAAGACCAAGTCAGGCCGCATCGATGTCTACGGCTTCTCAGCCCTGTGGAAATTCATCCAGCAGTGGAA
GAACCTCTTCCAGCAGTATGACCGGGACCGCTCGGGCTCCATTAGCTACACAGAGCTGCAGCAAGCTCTGTCCCAAATGG
GCTACAACCTGAGCCCCCAGTTCACGCAGCTTCTGGTCTCCCGCTACTGCCCACGCTCTGCCAATCCTGCCATGCAGCTT
GACCGCTTCATCCAGGTGTGCACCCAGCTGCAGGTGCTGACAGAGGCCTTCCGGGAGAAGGACACAGCTGTACAAGGCAA
CATTCGGCTCAGCTTTGAGGACTTCGTCACCATGACAGCTTCTCGGATGCTATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 52 .47 RPM
SRP007412_cerebellum 43 .53 RPM
SRP007412_heart 15 .98 RPM
SRP007412_kidney 35 .73 RPM
SRP007412_liver 37 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000006355 ortholog_one2one 1 retrogene
retro_cjac_1745,
Homo sapiens ENSG00000162517 ortholog_one2one 1 retrogene
retro_hsap_497,
Gorilla gorilla ENSGGOG00000015897 ortholog_one2one 1 retrogene
retro_ggor_464,
Macropus eugenii ENSMEUG00000014458 ortholog_one2one 1 retrogene
retro_meug_375,
Microcebus murinus ENSMICG00000001374 ortholog_one2one 1 retrogene
retro_mmur_937,
Macaca mulatta ENSMMUG00000023397 ortholog_one2many 1 retrogene
retro_mmul_146,
Monodelphis domestica ENSMODG00000017573 ortholog_one2one 1 retrogene
retro_mdom_1930,
Nomascus leucogenys ENSNLEG00000001979 ortholog_one2one 1 retrogene
retro_nleu_2422,
Oryctolagus cuniculus ENSOCUG00000005744 ortholog_one2one 1 retrogene
retro_ocun_461,
Pan troglodytes ENSPTRG00000000463 ortholog_one2one 1 retrogene
retro_ptro_375,
Rattus norvegicus ENSRNOG00000013972 ortholog_one2one 2 retrogenes
retro_rnor_1563, retro_rnor_2505,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_238 84.56 100.00
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Download FASTA sequences of all ENSPPYG00000001611 retrocopies