Parental gene: | Pef1, ENSRNOG00000013972 |
| Aliases: | Pef1, Peflin |
| Description: | Peflin [Source:UniProtKB/Swiss-Prot;Acc:Q641Z8] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 5:152039074..152062360(+) |
>ENSRNOG00000013972
ATGGCCAGCTATCCAGACGGGCAGAGTTACCCAGGAGCTGCAGGACAGGTACCTGGACCACACCCCGGTGGCTACTATCC
TGGACCTCCCCATGGTGGGGGCCAGTATGGCAGTGGATTCCCCCCTGGTGGTTACGGAGCTCCTGCCCCTGGAGGACCCT
ATGGCTACCCCAGTGCTGGAGGAACCCCCTCTGGAACTCCAGGCGGACCATATGGCGGTGGACCTCCAGGAGGCCCCTAT
GGTGGTGGACCTCCAGGAGGCCCCTATGGTCAGGCACATCCAAGTCCCTATGGTACCCAGCCGCCTGGACCTTATGGACA
GGGTGGCGTCCCCCCCAATGTCGATCCTGAGGCCTACTCCTGGTTCCAGTCAGTGGATGCCGACCACAGTGGCTATATCT
CACTCAAGGAGCTGAAGCAGGCCCTGGTCAACTCCAACTGGTCCTCATTCAATGATGAGACGTGCCTCATGATGATAAAC
ATGTTTGACAAGACCAAGACTGGCCGAATTGATGTCGTCGGCTTCTCAGCCTTATGGAAGTTCCTCCAGCAGTGGAAGAA
CCTCTTTCAGCAGTATGACCGGGACCACTCGGGATCCATCAGCTCCACAGAGCTGCAGCAAGCGCTGTCCCAGATGGGCT
ACAACCTGAGCCCTCAGTTCACGCAGCTCCTGGTTTCCCGATACTGTACGCGCTCTGCCATTCCCGCCATGCAGCTGGAC
TGCTTCATCAAGGTGTGTACCCAGCTTCAGGTGTTGACTGAGGCCTTCCGGGAGAAGGATACGGCTGTACAGGGCAACAT
CCGGCTCAGCTTTGAGGACTTTGTCACCATGACGGCTTCAAGGATGCTATGA
ATGGCCAGCTATCCAGACGGGCAGAGTTACCCAGGAGCTGCAGGACAGGTACCTGGACCACACCCCGGTGGCTACTATCC
TGGACCTCCCCATGGTGGGGGCCAGTATGGCAGTGGATTCCCCCCTGGTGGTTACGGAGCTCCTGCCCCTGGAGGACCCT
ATGGCTACCCCAGTGCTGGAGGAACCCCCTCTGGAACTCCAGGCGGACCATATGGCGGTGGACCTCCAGGAGGCCCCTAT
GGTGGTGGACCTCCAGGAGGCCCCTATGGTCAGGCACATCCAAGTCCCTATGGTACCCAGCCGCCTGGACCTTATGGACA
GGGTGGCGTCCCCCCCAATGTCGATCCTGAGGCCTACTCCTGGTTCCAGTCAGTGGATGCCGACCACAGTGGCTATATCT
CACTCAAGGAGCTGAAGCAGGCCCTGGTCAACTCCAACTGGTCCTCATTCAATGATGAGACGTGCCTCATGATGATAAAC
ATGTTTGACAAGACCAAGACTGGCCGAATTGATGTCGTCGGCTTCTCAGCCTTATGGAAGTTCCTCCAGCAGTGGAAGAA
CCTCTTTCAGCAGTATGACCGGGACCACTCGGGATCCATCAGCTCCACAGAGCTGCAGCAAGCGCTGTCCCAGATGGGCT
ACAACCTGAGCCCTCAGTTCACGCAGCTCCTGGTTTCCCGATACTGTACGCGCTCTGCCATTCCCGCCATGCAGCTGGAC
TGCTTCATCAAGGTGTGTACCCAGCTTCAGGTGTTGACTGAGGCCTTCCGGGAGAAGGATACGGCTGTACAGGGCAACAT
CCGGCTCAGCTTTGAGGACTTTGTCACCATGACGGCTTCAAGGATGCTATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 23 .80 RPM |
| SRP017611_kidney | 41 .80 RPM |
| SRP017611_brain | 29 .62 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000006355 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000162517 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000015897 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000014458 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000001374 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000023397 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000017573 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000001979 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000005744 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000001611 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000000463 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000014485 | within_species_paralog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000049780 | within_species_paralog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_1563 | 73.52 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_2505 | 82.13 | 82.69 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000013972 retrocopies