Parental gene:

Pef1, ENSRNOG00000013972

Aliases:Pef1, Peflin
Description:Peflin [Source:UniProtKB/Swiss-Prot;Acc:Q641Z8]
Organism:Rat (Rattus norvegicus)
Coordinates:5:152039074..152062360(+)


>ENSRNOG00000013972
ATGGCCAGCTATCCAGACGGGCAGAGTTACCCAGGAGCTGCAGGACAGGTACCTGGACCACACCCCGGTGGCTACTATCC
TGGACCTCCCCATGGTGGGGGCCAGTATGGCAGTGGATTCCCCCCTGGTGGTTACGGAGCTCCTGCCCCTGGAGGACCCT
ATGGCTACCCCAGTGCTGGAGGAACCCCCTCTGGAACTCCAGGCGGACCATATGGCGGTGGACCTCCAGGAGGCCCCTAT
GGTGGTGGACCTCCAGGAGGCCCCTATGGTCAGGCACATCCAAGTCCCTATGGTACCCAGCCGCCTGGACCTTATGGACA
GGGTGGCGTCCCCCCCAATGTCGATCCTGAGGCCTACTCCTGGTTCCAGTCAGTGGATGCCGACCACAGTGGCTATATCT
CACTCAAGGAGCTGAAGCAGGCCCTGGTCAACTCCAACTGGTCCTCATTCAATGATGAGACGTGCCTCATGATGATAAAC
ATGTTTGACAAGACCAAGACTGGCCGAATTGATGTCGTCGGCTTCTCAGCCTTATGGAAGTTCCTCCAGCAGTGGAAGAA
CCTCTTTCAGCAGTATGACCGGGACCACTCGGGATCCATCAGCTCCACAGAGCTGCAGCAAGCGCTGTCCCAGATGGGCT
ACAACCTGAGCCCTCAGTTCACGCAGCTCCTGGTTTCCCGATACTGTACGCGCTCTGCCATTCCCGCCATGCAGCTGGAC
TGCTTCATCAAGGTGTGTACCCAGCTTCAGGTGTTGACTGAGGCCTTCCGGGAGAAGGATACGGCTGTACAGGGCAACAT
CCGGCTCAGCTTTGAGGACTTTGTCACCATGACGGCTTCAAGGATGCTATGA

Library Parental gene expression (RPM)
SRP017611_brain 29 .62 RPM
SRP017611_kidney 41 .80 RPM
SRP017611_liver 23 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000006355 ortholog_one2one 1 retrogene
retro_cjac_1745,
Homo sapiens ENSG00000162517 ortholog_one2one 1 retrogene
retro_hsap_497,
Gorilla gorilla ENSGGOG00000015897 ortholog_one2one 1 retrogene
retro_ggor_464,
Macropus eugenii ENSMEUG00000014458 ortholog_one2one 1 retrogene
retro_meug_375,
Microcebus murinus ENSMICG00000001374 ortholog_one2one 1 retrogene
retro_mmur_937,
Macaca mulatta ENSMMUG00000023397 ortholog_one2many 1 retrogene
retro_mmul_146,
Monodelphis domestica ENSMODG00000017573 ortholog_one2one 1 retrogene
retro_mdom_1930,
Nomascus leucogenys ENSNLEG00000001979 ortholog_one2one 1 retrogene
retro_nleu_2422,
Oryctolagus cuniculus ENSOCUG00000005744 ortholog_one2one 1 retrogene
retro_ocun_461,
Pongo abelii ENSPPYG00000001611 ortholog_one2one 1 retrogene
retro_pabe_238,
Pan troglodytes ENSPTRG00000000463 ortholog_one2one 1 retrogene
retro_ptro_375,
Rattus norvegicus ENSRNOG00000014485 within_species_paralog 1 retrogene
retro_rnor_2840,
Rattus norvegicus ENSRNOG00000049780 within_species_paralog 1 retrogene
retro_rnor_1237,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1563 73.52 100.00
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2. retro_rnor_2505 82.13 82.69
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Download FASTA sequences of all ENSRNOG00000013972 retrocopies