RetrogeneDB ID: | retro_rnor_1563 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:202480478..202481303(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pef1 | ||
Ensembl ID: | ENSRNOG00000013972 | ||
Aliases: | Pef1, Peflin | ||
Description: | Peflin [Source:UniProtKB/Swiss-Prot;Acc:Q641Z8] |
Percent Identity: | 73.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MASYPDGQSYPGAAGQVPGP-HPGGYYPGPPHGGGQY-GSGFPPGGYGAPAPGGPYG-YPSAGGTPSGTP |
M.SYPD..S.PGAAGQVPGP..PGG.YPG.PHGG....G...P.GGY.APAPGGPYG..P..GG.PSGTP | |
Retrocopy | MPSYPDT*SCPGAAGQVPGP<TPGGSYPGLPHGGPVW>GGFPPSGGYRAPAPGGPYG<VPRVGGIPSGTP |
Parental | GGPYGGGPPGGPYGGGPPGGPYGQAHPSPYGTQPPGPYGQGGVPPNVDPEAYSWFQSVDADHSGYISLKE |
GGPYGGGPPGGP.G..PP..PYG...P.PYG..P..P.....V.P....EA.SWFQSVDA..SGYISLKE | |
Retrocopy | GGPYGGGPPGGPNGQLPP-SPYGTQQPGPYG--PGCPHQPPNVDP----EADSWFQSVDANGSGYISLKE |
Parental | LKQALVNSNWSSFNDETCLMMINM-FDKTKTGRIDVVGFSALWKFLQQWKNLFQQYDRDHSGSISSTELQ |
LK.ALVNSNWSS.NDET.LM.IN..FDKT..GRID...FSAL.K.LQ.W..LF.Q.DRDHSGSI.STELQ | |
Retrocopy | LKLALVNSNWSSCNDETGLMRINV>FDKTEAGRIDADIFSALRKSLQPWRSLFEQCDRDHSGSIRSTELQ |
Parental | QALSQMGYNLSPQFTQLLVSRYCTRSAIPAMQLDCFIKVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVT |
.ALSQMGYNLSPQFTQL.VS.YCTRSAIP.MQLDCFIKVC.QLQVLTEAFRE.DT.VQGNIRLS.EDFV. | |
Retrocopy | *ALSQMGYNLSPQFTQLPVSQYCTRSAIPTMQLDCFIKVCAQLQVLTEAFRE-DTTVQGNIRLSSEDFVA |
Parental | MTASRML |
MTASRML | |
Retrocopy | MTASRML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 29 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 41 .80 RPM |
SRP017611_liver | 0 .00 RPM | 23 .80 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006355 | 1 retrocopy | |
Homo sapiens | ENSG00000162517 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015897 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014458 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001374 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023397 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017573 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001979 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005744 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001611 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000463 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013972 | 2 retrocopies |
retro_rnor_1563 , retro_rnor_2505,
|
Rattus norvegicus | ENSRNOG00000014485 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000049780 | 1 retrocopy |