RetrogeneDB ID: | retro_nleu_2422 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397353.1:6585639..6586487(-) | ||
Located in intron of: | ENSNLEG00000014271 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PEF1 | ||
Ensembl ID: | ENSNLEG00000001979 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MASYPYRQGCPGAAGQAPGAPPGSYYPGPP-NSGGQYGSGLPPGGGYGGPAPGGPYGPPAGGGPYGHPNP |
MASY.Y.QGCPG.AGQAPG.PPGSYYPGPP.NSGGQY.S.LPPGGGYG.PAPGGPYGPPAG.GPYGH.NP | |
Retrocopy | MASYLYGQGCPGDAGQAPGTPPGSYYPGPP<NSGGQYSSVLPPGGGYGAPAPGGPYGPPAGRGPYGHLNP |
Parental | GMFPSGTPGGPYGGAAPGGPYGQPPPSSYGAQQPGLYGQGGAPPNVDPEAYSWFQSV-DSDHSGYISMKE |
GMFPSGTPGG...GAAPGGPYGQPPP.SYGAQQ..LYGQGG.PPN.D.EAYSWFQSV.DSD.SG.ISMKE | |
Retrocopy | GMFPSGTPGGQNDGAAPGGPYGQPPPNSYGAQQTRLYGQGGSPPNMD-EAYSWFQSV<DSDYSGFISMKE |
Parental | LKQALVNCNWSSFNDETCLMMINMFDKTKSGRIDVYGFSALWKFIQQWKNLFQQ-YDRDRSGSISYTELQ |
.KQALVNCNWS.FND.TCLMMINMFDKT.SG.I.VYGFSALWKFIQQWK.LFQQ.YDR..SGSISYTELQ | |
Retrocopy | VKQALVNCNWSLFNDGTCLMMINMFDKT*SGHINVYGFSALWKFIQQWKQLFQQ>YDRENSGSISYTELQ |
Parental | QALSQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVT |
QALSQMGY.LSPQFTQLLVS.YCP.SANPA.QLDRFIQVCTQLQV.TEAF.EKDTAVQGNIRLSF.D.VT | |
Retrocopy | QALSQMGYHLSPQFTQLLVSSYCPHSANPARQLDRFIQVCTQLQVPTEAFWEKDTAVQGNIRLSFKDVVT |
Parental | MTASRML |
MTA.RML | |
Retrocopy | MTAFRML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006355 | 1 retrocopy | |
Homo sapiens | ENSG00000162517 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015897 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014458 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001374 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023397 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017573 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001979 | 1 retrocopy |
retro_nleu_2422 ,
|
Oryctolagus cuniculus | ENSOCUG00000005744 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001611 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000463 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013972 | 2 retrocopies |