Parental gene:

TXNDC17, ENSCJAG00000011150

Aliases:None
Description:thioredoxin domain containing 17 [Source:HGNC Symbol;Acc:28218]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:98872070..98874392(+)


>ENSCJAG00000011150
ATGGCCCGCTACGAGGAGGTGAGTGTGTCCGGCTTCGAGGAGTTCAACCGGGCCGTGAAACAGCACAATGGCAAGACCAT
TTTCGCCTACTTTACAGGTTCTAAGGACGCTGGAGGGAAAAGCTGGTGCCCCGACTGCGTGCAGGCTGAACCAGTCGTAC
GAGAGGGGCTGAAGCACGTTAGTGAAGGATGTGTGTTCATCTACTGCCAAGTAGGAGACAAGCCTTATTGGAAAGATCCA
AATAATGACTTCAGAAAAAACTTGAAAGTAACAGCAGTGCCTACACTACTTAAGTATGGAACACCTCAAAAACTGGTAGA
ATCTGAGTGTCTTCAGGCCAACCTCGTGGAAATGTTGTTCTCTGAAGATTAA

Library Parental gene expression (RPM)
SRP051959_colon 15 .26 RPM
SRP051959_heart 5 .79 RPM
SRP051959_kidney 11 .69 RPM
SRP051959_liver 10 .57 RPM
SRP051959_lung 7 .14 RPM
SRP051959_lymph_node 7 .40 RPM
SRP051959_skeletal_muscle 5 .31 RPM
SRP051959_spleen 8 .28 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007038 ortholog_one2one 4 retrogenes
retro_amel_1181, retro_amel_1267, retro_amel_148, retro_amel_344,
Cavia porcellus ENSCPOG00000002887 ortholog_one2many 1 retrogene
retro_cpor_116,
Equus caballus ENSECAG00000025006 ortholog_one2one 1 retrogene
retro_ecab_430,
Echinops telfairi ENSETEG00000001905 ortholog_one2many 1 retrogene
retro_etel_14,
Felis catus ENSFCAG00000024143 ortholog_one2one 1 retrogene
retro_fcat_1128,
Homo sapiens ENSG00000129235 ortholog_one2one 2 retrogenes
retro_hsap_132, retro_hsap_2218,
Gorilla gorilla ENSGGOG00000003055 ortholog_one2one 2 retrogenes
retro_ggor_1750, retro_ggor_230,
Macropus eugenii ENSMEUG00000008946 ortholog_one2one 1 retrogene
retro_meug_1771,
Microcebus murinus ENSMICG00000006620 ortholog_one2one 2 retrogenes
retro_mmur_1093, retro_mmur_766,
Macaca mulatta ENSMMUG00000003788 ortholog_one2one 2 retrogenes
retro_mmul_365, retro_mmul_932,
Mustela putorius furo ENSMPUG00000011338 ortholog_one2one 2 retrogenes
retro_mputfur_518, retro_mputfur_564,
Mus musculus ENSMUSG00000020803 ortholog_one2one 3 retrogenes
retro_mmus_2817, retro_mmus_2818, retro_mmus_488,
Nomascus leucogenys ENSNLEG00000009230 ortholog_one2one 2 retrogenes
retro_nleu_2262, retro_nleu_2516,
Oryctolagus cuniculus ENSOCUG00000016557 ortholog_one2one 1 retrogene
retro_ocun_297,
Ochotona princeps ENSOPRG00000000509 ortholog_one2many 2 retrogenes
retro_opri_575, retro_opri_8,
Procavia capensis ENSPCAG00000003749 ortholog_one2one 1 retrogene
retro_pcap_180,
Pongo abelii ENSPPYG00000007880 ortholog_one2one 1 retrogene
retro_pabe_485,
Pan troglodytes ENSPTRG00000008644 ortholog_one2one 2 retrogenes
retro_ptro_137, retro_ptro_1683,
Pteropus vampyrus ENSPVAG00000002399 ortholog_one2one 1 retrogene
retro_pvam_1187,
Rattus norvegicus ENSRNOG00000014072 ortholog_one2one 1 retrogene
retro_rnor_1700,
Sorex araneus ENSSARG00000006501 ortholog_one2many 1 retrogene
retro_sara_20,
Ictidomys tridecemlineatus ENSSTOG00000021986 ortholog_one2one 2 retrogenes
retro_itri_197, retro_itri_574,
Tupaia belangeri ENSTBEG00000000539 ortholog_one2one 1 retrogene
retro_tbel_3760,
Tarsius syrichta ENSTSYG00000010996 ortholog_one2one 2 retrogenes
retro_tsyr_1058, retro_tsyr_982,
Tursiops truncatus ENSTTRG00000012072 ortholog_one2one 1 retrogene
retro_ttru_1252,
Vicugna pacos ENSVPAG00000001554 ortholog_one2one 1 retrogene
retro_vpac_501,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2775 60.80 100.00
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2. retro_cjac_2877 82.35 82.11
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3. retro_cjac_2887 72.73 97.56
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4. retro_cjac_3048 76.61 100.00
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Download FASTA sequences of all ENSCJAG00000011150 retrocopies