Parental gene:

CSNK1A1, ENSCJAG00000021121

Aliases:None
Description:casein kinase 1, alpha 1 [Source:HGNC Symbol;Acc:2451]
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:46918551..46978532(-)


>ENSCJAG00000021121
ATGGCGAGCAGCAGCGGCTCCAAGGCCGAATTCATTGTCGGAGGGAAATACAAACTGGTACGGAAGATCGGGTCTGGCTC
CTTCGGGGACATCTATCTGGCGATCAACATCACCAACGGCGAGGAAGTGGCAGTGAAGCTAGAATCTCAGAAGGCCAGGC
ATCCCCAGTTGCTGTACGAGAGCAAGCTCTATAAGATTCTTCAAGGTGGGGTTGGCATCCCCCACATACGGTGGTATGGT
CAGGAAAAAGACTACAATGTACTAGTCATGGATCTTCTGGGACCTAGCCTCGAAGACCTCTTCAATTTCTGTTCAAGAAG
GTTCACAATGAAAACTGTACTTATGTTAGCTGACCAGATGATCAGTAGAATTGAATATGTGCATACAAAGAATTTTATAC
ACAGAGACATTAAACCAGATAACTTCCTAATGGGTATTGGGCGTCACTGTAATAAGTGTTTAGAATCTCCAGTGGGGAAG
AGGAAAAGAAGCATGACTGTTAGTACTTCTCAGGACCCATCTTTCTCAGGATTAAACCAGTTATTCCTTATTGATTTTGG
TTTGGCCAAAAAGTACAGAGACAACAGGACAAGGCAACACATACCATACAGAGAAGATAAAAACCTCACTGGCACTGCCC
GATATGCTAGCATCAATGCACATCTTGGTATTGAGCAAAGTCGCCGAGATGACATGGAATCATTAGGATATGTTTTGATG
TATTTTAATAGAACCAGCCTGCCGTGGCAAGGGCTAAAGGCTGCAACAAAGAAACAAAAATATGAAAAGATTAGTGAAAA
GAAGATGTCCACTCCTGTTGAAGTTTTATGTAAGGGGTTTCCTGCAGAATTTGCCATGTACTTAAACTATTGTCGTGGGC
TACGCTTTGAGGAAGCCCCAGATTACATGTATCTGAGGCAGCTATTCCGCATTCTTTTCAGGACCCTGAACCATCAATAT
GACTACACATTTGATTGGACAATGTTAAAGCAGAAAGCAGCACAGCAGGCAGCCTCTTCCAGTGGGCAGGGTCAGCAGGC
CCAAACCCCCACAGGCAAGCAAACTGACAAAACCAAGAGTAACATGAAAGGTTTCTAA

Library Parental gene expression (RPM)
SRP051959_colon 134 .12 RPM
SRP051959_heart 129 .52 RPM
SRP051959_kidney 96 .75 RPM
SRP051959_liver 73 .69 RPM
SRP051959_lung 101 .95 RPM
SRP051959_lymph_node 87 .58 RPM
SRP051959_skeletal_muscle 92 .66 RPM
SRP051959_spleen 99 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005326 possible_ortholog 2 retrogenes
retro_btau_1662, retro_btau_49,
Canis familiaris ENSCAFG00000018286 possible_ortholog 1 retrogene
retro_cfam_1887,
Callithrix jacchus ENSCJAG00000017348 other_paralog 2 retrogenes
retro_cjac_2695, retro_cjac_3279,
Homo sapiens ENSG00000113712 ortholog_one2one 1 retrogene
retro_hsap_32,
Gorilla gorilla ENSGGOG00000013926 possible_ortholog 3 retrogenes
retro_ggor_1178, retro_ggor_742, retro_ggor_984,
Myotis lucifugus ENSMLUG00000002910 ortholog_one2many 4 retrogenes
retro_mluc_1531, retro_mluc_2134, retro_mluc_2215, retro_mluc_597,
Macaca mulatta ENSMMUG00000001758 ortholog_one2one 2 retrogenes
retro_mmul_2207, retro_mmul_295,
Monodelphis domestica ENSMODG00000009937 ortholog_one2many 1 retrogene
retro_mdom_2005,
Oryctolagus cuniculus ENSOCUG00000006669 ortholog_one2one 7 retrogenes
retro_ocun_1068, retro_ocun_1098, retro_ocun_1506, retro_ocun_500, retro_ocun_502, retro_ocun_506, retro_ocun_644,
Sorex araneus ENSSARG00000011446 possible_ortholog 1 retrogene
retro_sara_518,
Sarcophilus harrisii ENSSHAG00000015356 possible_ortholog 1 retrogene
retro_shar_834,
Sus scrofa ENSSSCG00000014435 possible_ortholog 1 retrogene
retro_sscr_560,
Ictidomys tridecemlineatus ENSSTOG00000022141 possible_ortholog 1 retrogene
retro_itri_1378,
Drosophila melanogaster FBgn0015024 ortholog_one2many 4 retrogenes
retro_dmel_10, retro_dmel_32, retro_dmel_40, retro_dmel_67,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2680 88.36 99.41
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Download FASTA sequences of all ENSCJAG00000021121 retrocopies