Parental gene:

CSNK1A1, ENSSSCG00000014435

Aliases:None
Description:Casein kinase I isoform alpha [Source:UniProtKB/Swiss-Prot;Acc:O19175]
Organism:Pig (Sus scrofa)
Coordinates:2:157388250..157428464(-)


>ENSSSCG00000014435
ATGGCGAGCAGCAGCGGCTCCAAGGCCGAGTTCATTGTCGGAGGGAAGTACAAACTGGTGCGGAAGATCGGCTCTGGCTC
CTTCGGGGACATTTACCTGGCGATCAACATCACCAACGGCGAGGAAGTGGCAGTGAAGCTAGAATCTCAGAAGGCCAGGC
ATCCCCAGTTGCTGTACGAGAGCAAACTCTATAAGATTCTTCAAGGTGGGGTCGGCATCCCCCACATACGGTGGTATGGT
CAGGAAAAAGACTACAATGTGCTCGTGATGGACCTGCTCGGACCCAGCCTCGAAGACCTCTTCAACTTCTGTTCCAGAAG
GTTCACAATGAAAACTGTACTCATGTTAGCCGACCAGATGATCAGTAGAATTGAATATGTGCATACAAAGAACTTTATAC
ACAGAGACATTAAACCAGATAACTTCCTAATGGGTATTGGGCGTCACTGTAATAAGTTATTCCTTATTGATTTTGGTTTG
GCCAAAAAGTACAGAGACAACAGGACAAGGCAACACATACCATACAGAGAAGATAAAAATCTCACTGGCACTGCCCGATA
CGCTAGCATCAATGCACATCTTGGTATTGAACAGAGTCGCCGAGATGACATGGAATCATTAGGATATGTTTTGATGTATT
TTAATAGAACCAGTCTGCCATGGCAAGGACTCAAGGCTGCAACAAAGAAGCAAAAATATGAAAAAATTAGCGAAAAGAAG
ATGTCCACACCTGTGGAAGTTTTGTGTAAGGGGTTTCCTGCAGAATTTGCCATGTACTTAAACTATTGTCGTGGGCTGCG
CTTTGAGGAAGCCCCGGATTACATGTACCTGAGACAGCTATTCCGCATTCTTTTCAGGACCCTGAATCACCAATATGACT
ACACATTTGACTGGACAATGTTAAAGCAGAAAGCAGCACAGCAAGCAGCCTCTTCAAGTGGGCAGGGTCAGCAGGCCCAA
ACCCCCACAGGCAAGCAAACTGACAAAACCAAGAGTAACATGAAAGGATTT

Library Parental gene expression (RPM)
SRP014902_placenta 98 .88 RPM
SRP014902_testis 96 .47 RPM
SRP018288_heart 91 .26 RPM
SRP018288_kidney 147 .17 RPM
SRP018288_liver 73 .08 RPM
SRP018288_lung 129 .73 RPM
SRP018856_adipose 137 .48 RPM
SRP035408_brain 33 .41 RPM
SRP035408_liver 45 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005326 ortholog_one2one 2 retrogenes
retro_btau_1662, retro_btau_49,
Canis familiaris ENSCAFG00000018286 ortholog_one2one 1 retrogene
retro_cfam_1887,
Callithrix jacchus ENSCJAG00000021121 possible_ortholog 1 retrogene
retro_cjac_2680,
Homo sapiens ENSG00000113712 possible_ortholog 1 retrogene
retro_hsap_32,
Gorilla gorilla ENSGGOG00000013926 ortholog_one2one 3 retrogenes
retro_ggor_1178, retro_ggor_742, retro_ggor_984,
Myotis lucifugus ENSMLUG00000002910 possible_ortholog 4 retrogenes
retro_mluc_1531, retro_mluc_2134, retro_mluc_2215, retro_mluc_597,
Macaca mulatta ENSMMUG00000001758 possible_ortholog 2 retrogenes
retro_mmul_2207, retro_mmul_295,
Monodelphis domestica ENSMODG00000009937 possible_ortholog 1 retrogene
retro_mdom_2005,
Oryctolagus cuniculus ENSOCUG00000006669 possible_ortholog 7 retrogenes
retro_ocun_1068, retro_ocun_1098, retro_ocun_1506, retro_ocun_500, retro_ocun_502, retro_ocun_506, retro_ocun_644,
Otolemur garnettii ENSOGAG00000003253 possible_ortholog 2 retrogenes
retro_ogar_1195, retro_ogar_825,
Sorex araneus ENSSARG00000011446 possible_ortholog 1 retrogene
retro_sara_518,
Sarcophilus harrisii ENSSHAG00000015356 possible_ortholog 1 retrogene
retro_shar_834,
Ictidomys tridecemlineatus ENSSTOG00000022141 ortholog_one2one 1 retrogene
retro_itri_1378,
Drosophila melanogaster FBgn0015024 ortholog_one2one 4 retrogenes
retro_dmel_10, retro_dmel_32, retro_dmel_40, retro_dmel_67,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_560 78.97 57.57
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Download FASTA sequences of all ENSSSCG00000014435 retrocopies