RetrogeneDB ID:

retro_dmel_67

Retrocopy
location
Organism:Fruit fly (Drosophila melanogaster)
Coordinates:3R:1251465..1252899(-)
Located in intron of:FBgn0037326
Retrocopy
information
Ensembl ID:FBgn0037325
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:CkIalpha
Ensembl ID:FBgn0015024
Aliases:None
Description:Casein kinase Ialpha [Source:FlyBase gene name;Acc:FBgn0015024]


Retrocopy-Parental alignment summary:






>retro_dmel_67
ATGGCGGAACGGGAAAAGGGGCGTGCCAAGGACGACAGACGTTGGCAAGGCCGTTCCGATGTTCACCAATCCAAGCCGCA
GATCCGAAAGGAGCGCCGCCATCCGCCACAGCCAAATCATCCTCATGAGAAGGACCAGCGACAAGATCGTCGGTTCTCAG
AGGAGAAGCAATCCCTACCGGAAATTATAGTGGCGGGAAAGTACCGTTTATTGAAGCGTATTGGAAACGGATCCTTCGGC
GAACTATTCCAGGCCGAGGGCCTCAAGTACCACGAGAAGGTGGCCATAAAGCTGGAGAGCTCCACGGTCAAGCACCCATT
GCTGCCACGCGAGGCCAGGATCTATGGCATCCTGCAGGGCGGACTGGGCATCCCGCATGTGAAGCACTATGCCACCGAGG
GGGCGTACAATGTCATGGTGATGGACCTCCTGGGGCCCACGCTGGAGGATCTGCTAAACCTCTGCTCGCGCTCCTTTAGC
ATGAAGACCACCCTGATGCTGGCCGACCAGATCCTTGCCCGCGTGGAGCTGCTCCACCGGAGATGCTTTATCCACCGGGA
CATCAAGCCGGACAACTTCCTGATGGGCCTGAACCGCCACCAGACTCAGGTGTACATGATTGACTTCGGACTGGCCAAAA
AGTTCTACAGCCTGCGCACCCAGAAGCACATCGGCTACACGGAGAACCGGGACCTGGTAGGTACGGCCCGGTACGCCAGT
GTGCGGGCCCATTACGCGGAGCAGAGTCGTCGGGATGACCTAGAGTCCGTGGGCTACCTGCTGCTCTACTTCCAGCGGGG
TCGTCTTCCCTGGCAGGGAATCCGGGCGCAGTCGCAGGCCCAGAAGTACGAGAAGATAGCTGAGTACAAGGCCAACATCC
CACTCCAGCAACTCTGCTCCGGATTGCCTGTCGAGTTCTTCATGTATCTGAAGTACTGCCGCAAGCTGCACTTCGCCGAG
AAGCCGGATTACGTGTATCTGCAGCAGCTGTTCAAGGTGCTCTTCCGGAACCAGTACAAGGTGTGTGACTTCCTCTTCGA
CTGGGTCGTTTTGAAGCGAGAGTCGCCGGAGCAACAATCGCAGCAAAAGGGTAGGGAAAGGGACAGGGGTGGAAAAAGGA
ACGTGGTGGTGCAGAAGGAGAGGCATCGAAACAAGGATAGGGATAGTGATACGCAGAGGTGTCGAATTAAGAATGGGGGA
GATCTGCTCGAGATCGAGGAAAATGAAAGTACCACTGGGGAAGACCCAAACGAAGATAAGCCTCAAAAAAAGCATGGCAA
GGCCTGCTCCTGCAGCTACCACCTCCAGAAGAAGCGCCTCCAGGATCGGGATAGGAGGGCGCCTCTGATGACCGAGCGGA
GGATCCTTTCGGGGGAGCAGGAGCAGGAGCTGGAGCTGGAGCTGCGGGGGTCCCCTCAGATGCCCTGTCTTTGA

ORF - retro_dmel_67 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 54.75 %
Parental protein coverage: 90.5 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalKESRPEIIVGGKYRVIRKIGSGSFGDIYLGMSIQSGEEVAIKMESAHARHPQLLYEAKLYRILSGGVGFP
K.S.PEIIV.GKYR....IG.GSFG...........E.VAIK.ES....HP.L..EA..Y.IL.GG.G.P
RetrocopyKQSLPEIIVAGKYRLLKRIGNGSFGELFQAEGLKYHEKVAIKLESSTVKHPLLPREARIYGILQGGLGIP
ParentalRIRHHGKEKNFNTLVMDLLGPSLEDLFNFCTRHFTIKTVLMLVDQMIGRLEYIHLKCFIHRDIKPDNFLM
...H...E...N..VMDLLGP.LEDL.N.C.R.F..KT.LML.DQ...R.E..H..CFIHRDIKPDNFLM
RetrocopyHVKHYATEGAYNVMVMDLLGPTLEDLLNLCSRSFSMKTTLMLADQILARVELLHRRCFIHRDIKPDNFLM
ParentalGIGRHCNKLFLIDFGLAKKFRDPHTRHHIVYREDKNLTGTARYASINAHLGIEQSRRDDMESLGYVMMYF
G..RH......IDFGLAKKF....T..HI.Y.E...L.GTARYAS..AH...EQSRRDD.ES.GY...YF
RetrocopyGLNRHQTQVYMIDFGLAKKFYSLRTQKHIGYTENRDLVGTARYASVRAHYA-EQSRRDDLESVGYLLLYF
ParentalNRGVLPWQGMKANTKQQKYEKISEKKMSTPIEVLCKGSPAEFSMYLNYCRSLRFEEQPDYMYLRQLFRIL
.RG.LPWQG..A....QKYEKI.E.K...P...LC.G.P.EF.MYL.YCR.L.F.E.PDY.YL.QLF..L
RetrocopyQRGRLPWQGIRAQSQAQKYEKIAEYKANIPLQQLCSGLPVEFFMYLKYCRKLHFAEKPDYVYLQQLFKVL
ParentalFRTLNHQYDYIYDWTMLKQKTHQGQ
FR......D...DW..LK......Q
RetrocopyFRNQYKVCDFLFDWVVLKRESPEQQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Drosophila melanogaster was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_dmel_67 retrocopy.

TSS - click to see more details

Drosophila melanogaster was not studied using FANTOM5 data.

Lab - click to see more details

retro_dmel_67 was not experimentally validated.

Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 15 parental genes, and 32 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000053262 retrocopies
retro_btau_1662, retro_btau_49,
Canis familiaris ENSCAFG000000182861 retrocopy
retro_cfam_1887,
Callithrix jacchus ENSCJAG000000211211 retrocopy
retro_cjac_2680,
Homo sapiens ENSG000001137121 retrocopy
retro_hsap_32,
Gorilla gorilla ENSGGOG000000139263 retrocopies
retro_ggor_1178, retro_ggor_742, retro_ggor_984,
Myotis lucifugus ENSMLUG000000029104 retrocopies
retro_mluc_1531, retro_mluc_2134, retro_mluc_2215, retro_mluc_597,
Macaca mulatta ENSMMUG000000017582 retrocopies
retro_mmul_2207, retro_mmul_295,
Monodelphis domestica ENSMODG000000099371 retrocopy
retro_mdom_2005,
Oryctolagus cuniculus ENSOCUG000000066697 retrocopies
retro_ocun_1068, retro_ocun_1098, retro_ocun_1506, retro_ocun_500, retro_ocun_502, retro_ocun_506, retro_ocun_644,
Otolemur garnettii ENSOGAG000000032532 retrocopies
retro_ogar_1195, retro_ogar_825,
Sorex araneus ENSSARG000000114461 retrocopy
retro_sara_518,
Sarcophilus harrisii ENSSHAG000000153561 retrocopy
retro_shar_834,
Sus scrofa ENSSSCG000000144351 retrocopy
retro_sscr_560,
Ictidomys tridecemlineatus ENSSTOG000000221411 retrocopy
retro_itri_1378,
Drosophila melanogaster FBgn0015024 4 retrocopies
retro_dmel_10, retro_dmel_32, retro_dmel_40, retro_dmel_67 ,


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