Parental gene:

ENSCJAG00000031971

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:41745524..41755964(-)


>ENSCJAG00000031971
ATGGCGGACGGCGGCGGCGGCGGGGGAACGGGCGCGGTGGGCGGCGGCGGAGCTGGCCAGGCCTCTGCCGGGGCAGCAAC
GGGCGCTACTGGGGCCAGCGGAGGCGGTGGCCCCATCAACCCCGCCTCGCTGCCTCCCGGCGACCCGCAGCTCATCGCTC
TCATCGTGGAGCAGCTCAAGAGCCGGGGCCTCTTTGACAGCTTCCGCCGGGACTGCCTGGCCGACGTGGACACAAAGCCA
GCTTACCAAAACCTGAGGCAGAAAGTGGATAATTTTGTGTCAACACATCTGGACAAGCAGGAATGGAATCCTACGATGAA
CAAAAACCAATTGCGAAATGGTCTGAGGCAGAGTGTGGTTCAGTCAGGGATGTTGGAAGCTGGAGTAGACAGGATTATTT
CTCAGGTGGTAGATCCAAAACTAAACCACATCTTCAGGCCACAAATAGAACGAGCAATTCATGAGTTCCTGGCAGCCCAG
AAAAAAGCAGCTGTGCCAGCACCCCCTCCAGAGCCCGACGGCCAGGACCCACCAGCTCCATCCCAGGACACTTCCTAA

Library Parental gene expression (RPM)
SRP051959_spleen 5 .63 RPM
SRP051959_skeletal_muscle 6 .66 RPM
SRP051959_lymph_node 4 .38 RPM
SRP051959_lung 6 .07 RPM
SRP051959_liver 6 .58 RPM
SRP051959_kidney 8 .16 RPM
SRP051959_heart 7 .00 RPM
SRP051959_colon 4 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000034598 ortholog_one2one 1 retrogene
Canis familiaris ENSCAFG00000016776 ortholog_one2one 1 retrogene
Homo sapiens ENSG00000145919 ortholog_one2many 3 retrogenes
Gorilla gorilla ENSGGOG00000010925 ortholog_one2many 2 retrogenes
Microcebus murinus ENSMICG00000002626 ortholog_one2one 1 retrogene
Macaca mulatta ENSMMUG00000013793 ortholog_one2many 2 retrogenes
Mus musculus ENSMUSG00000044502 ortholog_one2one 1 retrogene
Nomascus leucogenys ENSNLEG00000000476 ortholog_one2many 1 retrogene
Oryctolagus cuniculus ENSOCUG00000014283 ortholog_one2many 1 retrogene
Otolemur garnettii ENSOGAG00000001107 ortholog_one2one 3 retrogenes
Pongo abelii ENSPPYG00000016057 ortholog_one2one 2 retrogenes
Pan troglodytes ENSPTRG00000017544 ortholog_one2many 2 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000013505 ortholog_one2one 1 retrogene
Tupaia belangeri ENSTBEG00000014046 ortholog_one2one 1 retrogene
Tarsius syrichta ENSTSYG00000007617 ortholog_one2one 1 retrogene
Tursiops truncatus ENSTTRG00000000384 ortholog_one2one 2 retrogenes
Vicugna pacos ENSVPAG00000004260 ortholog_one2one 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_953 83.61 98.38
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2. retro_cjac_1154 64.29 82.16
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3. retro_cjac_1515 81.22 96.22
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4. retro_cjac_1536 98.39 100.00
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Download FASTA sequences of all ENSCJAG00000031971 retrocopies