Parental gene:

ARF3, ENSCPOG00000025074

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_9:50637168..50639203(+)


>ENSCPOG00000025074
ATGGGCAATATCTTCGGAAACCTTCTTAAGAGCTTGATTGGGAAGAAGGAGATGCGCATCCTGATGGTGGGCCTAGATGC
TGCTGGAAAGACCACCATCCTATACAAGCTGAAACTAGGGGAGATTGTCACCACCATCCCCACCATCGGATTTAATGTGG
AAACAGTAGAGTATAAAAATATTAGCTTCACAGTGTGGGATGTAGGTGGCCAGGACAAGATTCGGCCCCTCTGGAGGCAC
TACTTCCAGAACACCCAAGGCTTGATATTTGTGGTCGACAGCAATGATCGGGAACGAGTAAATGAGGCCCGGGAAGAGCT
GATGAGGATGCTGGCAGAGGATGAGCTCAGGGATGCTGTGCTGCTTGTCTTTGCAAACAAACAGGATCTGCCGAACGCTA
TGAATGCTGCTGAGATTACGGACAAGCTGGGTCTACATTCCCTGCGTCATCGCAACTGGTACATTCAGGCCACCTGTGCC
ACCAGCGGGGATGGGCTGTATGAAGGCCTGGACTGGCTGGCCAATCAGCTCAAAAACAAGAAGTGA

Library Parental gene expression (RPM)
SRP017611_liver 16 .45 RPM
SRP017611_kidney 29 .52 RPM
SRP017611_brain 230 .76 RPM
SRP040447_lung 43 .63 RPM
SRP040447_skeletal_muscle 8 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000008240 ortholog_one2one 1 retrogene
retro_acar_12,
Cavia porcellus ENSCPOG00000010334 within_species_paralog 1 retrogene
retro_cpor_1261,
Cavia porcellus ENSCPOG00000021174 within_species_paralog 1 retrogene
retro_cpor_1310,
Ciona savignyi ENSCSAVG00000007011 possible_ortholog 1 retrogene
retro_csav_2,
Homo sapiens ENSG00000134287 ortholog_one2one 1 retrogene
retro_hsap_36,
Latimeria chalumnae ENSLACG00000019009 possible_ortholog 1 retrogene
retro_lcha_10,
Loxodonta africana ENSLAFG00000004207 ortholog_one2one 1 retrogene
retro_lafr_115,
Macropus eugenii ENSMEUG00000005072 possible_ortholog 7 retrogenes
retro_meug_1036, retro_meug_1117, retro_meug_1857, retro_meug_29, retro_meug_395, retro_meug_616, retro_meug_946,
Microcebus murinus ENSMICG00000017545 ortholog_one2one 1 retrogene
retro_mmur_37,
Monodelphis domestica ENSMODG00000013804 ortholog_one2one 1 retrogene
retro_mdom_241,
Mus musculus ENSMUSG00000051853 ortholog_one2one 1 retrogene
retro_mmus_147,
Nomascus leucogenys ENSNLEG00000017859 ortholog_one2one 2 retrogenes
retro_nleu_1348, retro_nleu_94,
Petromyzon marinus ENSPMAG00000000531 possible_ortholog 1 retrogene
retro_pmar_5,
Rattus norvegicus ENSRNOG00000033155 ortholog_one2one 1 retrogene
retro_rnor_272,
Rattus norvegicus ENSRNOG00000048089 possible_ortholog 1 retrogene
retro_rnor_2521,
Sarcophilus harrisii ENSSHAG00000003635 ortholog_one2one 2 retrogenes
retro_shar_25, retro_shar_364,
Tetraodon nigroviridis ENSTNIG00000011685 possible_ortholog 1 retrogene
retro_tnig_19,
Tursiops truncatus ENSTTRG00000004698 ortholog_one2one 1 retrogene
retro_ttru_1081,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_92 69.54 96.13
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Download FASTA sequences of all ENSCPOG00000025074 retrocopies