Parental gene: | PCED1A, ENSCPOG00000025475 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_8:21777615..21781827(+) |
>ENSCPOG00000025475
ATGGTCTTCTGTCTGGAAAACGAGATTCCGTGCCGCCCGCTGCGAAGCGCCATGGTCCACATCCAAGCCTCAGAAGTCCA
GCAGCTGCTACACAACAAGTTCGTGGTCATCTTGGGGGACTCCATCCAGAGAGCTGTATATAAGGACCTGGTGCTTCTGC
TTCAGAAAGACTCACTGCTCACAGTTGCCCAGTTGAAAGCCAAGGGGGAGCTGAGCTTTGAACAGGACCAGCTGGTGGCT
GGGGGCCAGCTGGGTGAGCTGCACAACGGGACACAGTATCGTGAAGTCCGCCAGTTCTGCTCGGGTTCTGGCCATCACCT
TGTACGCTTCTACTTCCTCACCCGAGTTTACTCCGAGTACCTGGAGGATGTCCTGGAGGAGCTGACATATGGGCCTGCCC
CGGACCTGGTGATCATCAACTCTTGCCTTTGGGATCTCTCCAGGTATGGCCGCTGCTCAATGGAGAGCTACCGAGAGAAC
TTGGAACGAGTGTTCGTACGCATGGACCAGGTGTTGCCAGACTCCTGTCTGCTGGTGTGGAACATGGCAATGCCCCTGGG
GGAGCGTGTCACTGGGGGTTTCCTACTGCCAGAGCTCCAGCCCCTCGCAGCCACATTGCGACGGGATGTGGTTGAGGGGA
ACTTCTACAGTGCTACCCTGGCTGGTGACCACTACTTCGATGTTTTGGATCTTCACTTTCATTTCCGGCATGCAGTACAG
CACCGTCATCGAGATGGTGTCCACTGGGACCAACATGCACACCGTCACCTCTCACACTTGCTTCTGACCCATGTGGCCGA
TGCCTGGGGTGTGGAGCTGCCTAAGCGGGACCATCCCCCTGACCCATGGATTGAGGACTGGCCAGAGATGGATCATCAGT
TCCAGGGAAGCCATAGGCAGCCCCCAGACTTCGGGGAGCAACTGCAGGATGCCCCTTTCTACCCAGGCCAGCCCTTCCCA
CCCCAGGAATTCTTCAGTTATAATCCAATGGAAGACTTCTCGATGCCTCTCAATTTAGGGTGTGGCCCTGGAGTGAACTT
TGCACCTAGCCCCCTGCCACCTCCAGTTCCTGGCTCTGTCTCCCACGGTCAGCACCGGGGCCCAGTGGTCCACCGGGGGA
TGCCACGCTGTGTTCTCAATAGCCCCTACCATGTGCCAAGGTTGGGGGTGCCCAGCAGGCAGCGACTCAGGCACTCAGAC
AGATTGATCCACACATACAAACTGGACAGGCGGGGACATACCCATTCAGGAACATGGCCAGGCTAG
ATGGTCTTCTGTCTGGAAAACGAGATTCCGTGCCGCCCGCTGCGAAGCGCCATGGTCCACATCCAAGCCTCAGAAGTCCA
GCAGCTGCTACACAACAAGTTCGTGGTCATCTTGGGGGACTCCATCCAGAGAGCTGTATATAAGGACCTGGTGCTTCTGC
TTCAGAAAGACTCACTGCTCACAGTTGCCCAGTTGAAAGCCAAGGGGGAGCTGAGCTTTGAACAGGACCAGCTGGTGGCT
GGGGGCCAGCTGGGTGAGCTGCACAACGGGACACAGTATCGTGAAGTCCGCCAGTTCTGCTCGGGTTCTGGCCATCACCT
TGTACGCTTCTACTTCCTCACCCGAGTTTACTCCGAGTACCTGGAGGATGTCCTGGAGGAGCTGACATATGGGCCTGCCC
CGGACCTGGTGATCATCAACTCTTGCCTTTGGGATCTCTCCAGGTATGGCCGCTGCTCAATGGAGAGCTACCGAGAGAAC
TTGGAACGAGTGTTCGTACGCATGGACCAGGTGTTGCCAGACTCCTGTCTGCTGGTGTGGAACATGGCAATGCCCCTGGG
GGAGCGTGTCACTGGGGGTTTCCTACTGCCAGAGCTCCAGCCCCTCGCAGCCACATTGCGACGGGATGTGGTTGAGGGGA
ACTTCTACAGTGCTACCCTGGCTGGTGACCACTACTTCGATGTTTTGGATCTTCACTTTCATTTCCGGCATGCAGTACAG
CACCGTCATCGAGATGGTGTCCACTGGGACCAACATGCACACCGTCACCTCTCACACTTGCTTCTGACCCATGTGGCCGA
TGCCTGGGGTGTGGAGCTGCCTAAGCGGGACCATCCCCCTGACCCATGGATTGAGGACTGGCCAGAGATGGATCATCAGT
TCCAGGGAAGCCATAGGCAGCCCCCAGACTTCGGGGAGCAACTGCAGGATGCCCCTTTCTACCCAGGCCAGCCCTTCCCA
CCCCAGGAATTCTTCAGTTATAATCCAATGGAAGACTTCTCGATGCCTCTCAATTTAGGGTGTGGCCCTGGAGTGAACTT
TGCACCTAGCCCCCTGCCACCTCCAGTTCCTGGCTCTGTCTCCCACGGTCAGCACCGGGGCCCAGTGGTCCACCGGGGGA
TGCCACGCTGTGTTCTCAATAGCCCCTACCATGTGCCAAGGTTGGGGGTGCCCAGCAGGCAGCGACTCAGGCACTCAGAC
AGATTGATCCACACATACAAACTGGACAGGCGGGGACATACCCATTCAGGAACATGGCCAGGCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 4 .09 RPM |
| SRP017611_kidney | 12 .98 RPM |
| SRP017611_brain | 22 .20 RPM |
| SRP040447_lung | 14 .20 RPM |
| SRP040447_skeletal_muscle | 5 .02 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000003863 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000016497 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000002886 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000132635 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000016578 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000028662 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000005200 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000037773 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004701 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000010833 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000013185 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000006834 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000007168 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000016356 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000003464 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_79 | 68.22 | 61.05 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_343 | 63.30 | 63.18 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000025475 retrocopies