Parental gene:

Pced1a, ENSMUSG00000037773

Aliases:Pced1a, A930025D01Rik, AI480484, Fam113a
Description:PC-esterase domain containing 1A [Source:MGI Symbol;Acc:MGI:2442177]
Organism:Mouse (Mus musculus)
Coordinates:2:130417246..130424701(-)


>ENSMUSG00000037773
ATGGTCTTCTGTTTGGAAAACGAGATGCCACACCGCCTGCTGGGAAGCGCCATGGTCCACTTCCATGCCTCAGAAGTCCA
GCAGCTGCTACACAACAAGTTCGTGGTCATTTTGGGGGACTCCATCCAAAGAGCTGTGTATAAGGACCTGGTGCTTCTGC
TCCAGAAAGACACACTGCTCACAGCTTCCCAGTTAAAAGCCAAGGGGGAGCTGAGCTTTGAACAGGACCAGCTGGTGGCT
GGGGGCCAGCTGGGAGAGCTGCACAACGGGACACAGTACCGCGAGGTCCGCCAGTTCTGCTCTGGCTCTGGCCACCACCT
TGTGCGCTTCTACTTCCTCACCCGAGTTTACTCCGAGTACCTTGAGGACATCCTGGAGGAGCTGTCATATGGACCTGCCC
CTGACCTAGTGATCATCAACTCCTGCCTCTGGGATCTCTCCAGATATGGCCGCTGCTCAATGGAGAGCTACAGGGAGAAC
CTGGAACGAGTCTTTGTACGAATGGACCAGGTTTTACCAGACTCTTGTCTGCTGGTGTGGAACTTGGCAATGCCTCTGGG
GGAACGTGTCACTGGGGGTTTCCTCCTGCCAGAGCTCCAGCCCCTGGCAGTGTCTCTGCGACAGGATGTGGTTGAGGGGA
ACTTCTACAGCGCTACACTAGCCGGGAAACACTGTTTCGACGTCCTAGATCTCCACTTCCATTTCCGGCATGCTGTCCGT
CACCGTCATCGAGATGGTGTCCATTGGGACCAGCATGCACACCGCCACCTCTCGCACTTACTTCTGGCCCACGTGGCCGA
TGCCTGGGGTGTGGAGCTGCCCAAACATGACCGGCTGCCAGACCCATGGATTGAGGACTGGTCAGAGATGGATCATTCAT
TCCAGGGAAGCCATAAGCAGCCCCCAGACTTCAGGGAGAAGCTGGCCTTGCCCCTGCTCCCACCTTTCCACTTGCCTCCT
CCCATGTCTTTTCCTTACCCACTTGAGCCCTCACCACCTCCCTTGTTCCCACCCCTGCCCCAGGATACCCCCTTTTTCCA
AGGCCAGCCCTTTCCACCCTATGAATTCAAATACAATGCAATGGAGGACTTCTCAATGCCAGGATGTGGCCCTGGAATGA
ACTTTGTGCCTGGCCCCCTGCCACCATCAGTCTCTGGCCCTGTCTCCCACGGTCAACACCGGGGCCCAGTGGTCCACCGG
GGCAAGCCACGTTGTGTTCTGAACAACCCCTACCATGTACCAAGAATTGGGGGTCCATGCAGGCATCGACTCAGACACTC
AGACAGACTGATCCACACATACAAACAGGACAGGCGGGGACATGCCCATTCGGGAACATGGCCTGGATAG

Library Parental gene expression (RPM)
SRP007412_brain 15 .56 RPM
SRP007412_cerebellum 15 .94 RPM
SRP007412_heart 9 .09 RPM
SRP007412_kidney 12 .07 RPM
SRP007412_liver 13 .30 RPM
SRP007412_testis 29 .09 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003863 ortholog_one2one 1 retrogene
retro_btau_182,
Cavia porcellus ENSCPOG00000025475 ortholog_one2one 2 retrogenes
retro_cpor_343, retro_cpor_79,
Equus caballus ENSECAG00000016497 ortholog_one2one 1 retrogene
retro_ecab_87,
Felis catus ENSFCAG00000002886 ortholog_one2one 1 retrogene
retro_fcat_18,
Homo sapiens ENSG00000132635 ortholog_one2one 2 retrogenes
retro_hsap_2207, retro_hsap_82,
Microcebus murinus ENSMICG00000016578 ortholog_one2one 2 retrogenes
retro_mmur_163, retro_mmur_278,
Myotis lucifugus ENSMLUG00000028662 ortholog_one2one 2 retrogenes
retro_mluc_222, retro_mluc_647,
Macaca mulatta ENSMMUG00000005200 ortholog_one2one 2 retrogenes
retro_mmul_333, retro_mmul_341,
Otolemur garnettii ENSOGAG00000004701 ortholog_one2one 1 retrogene
retro_ogar_81,
Pongo abelii ENSPPYG00000010833 ortholog_one2one 2 retrogenes
retro_pabe_192, retro_pabe_2080,
Pan troglodytes ENSPTRG00000013185 ortholog_one2one 1 retrogene
retro_ptro_105,
Pteropus vampyrus ENSPVAG00000006834 ortholog_one2one 1 retrogene
retro_pvam_9,
Sus scrofa ENSSSCG00000007168 ortholog_one2one 1 retrogene
retro_sscr_23,
Ictidomys tridecemlineatus ENSSTOG00000016356 ortholog_one2one 2 retrogenes
retro_itri_1190, retro_itri_783,
Tursiops truncatus ENSTTRG00000003464 ortholog_one2one 1 retrogene
retro_ttru_16,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_332 61.11 67.71
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2. retro_mmus_1001 76.35 85.08
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Download FASTA sequences of all ENSMUSG00000037773 retrocopies