Parental gene:

PCED1A, ENSPTRG00000013185

Aliases:PCED1A, FAM113A
Description:PC-esterase domain containing 1A [Source:HGNC Symbol;Acc:16212]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:20:2694460..2699824(-)


>ENSPTRG00000013185
ATGGTCTTCTGTCTGTCGAGCGAGGAGCCGCGCCGCCCGCTGCGAAGCGACATGGTCCACTTCCAGGCCTCGGAAGTCCA
GCAGCTGCTACACAACAAGTTCGTGGTCATCTTGGGGGACTCCATTCAGAGGGCTGTGTACAAGGACCTGGTGCTCTTGC
TCCAGAAAGACTCACTGCTCACAGCTGCCCAGCTGAAAGCCAAGGGGGAGCTGAGCTTTGAACAGGACCAGCTGGTGGCT
GGGGGCCAGCTGGGCGAGCTGCACAACGGGACACAGTATCGTGAGGTCCGCCAGTTCTGCTCGGGCTCTGGCCACCACCT
TGTGCGCTTCTACTTCCTCACTCGTGTTTACTCCGAGTACCTTGAGGATGTTCTGGAAGAGCTGACATATGGACCTGCCC
CGGACCTGGTGATCATCAACTCCTGCCTCTGGGATCTCTCCAGATATGGTCGCTGCTCAATGGAGAGCTACCGGGAGAAC
CTGGAGCGGGTGTTTGTGCGCATGGACCAAGTATTGCCAGACTCCTGCCTGCTGGTGTGGAACATGGCGATGCCCCTCGG
GGAGCGTATCACTGGGGGTTTCCTCCTGCCAGAGCTCCAGCCCCTGGCAGGCTCCCTGCGGCGGGATGTGGTTGAAGGGA
ACTTCTACAGTGCTACGCTGGCCGGGGACCACTGCTTTGATGTCCTAGACCTCCACTTTCACTTCCGGCATGCAGTACAG
CACCGTCATCGGGATGGTGTCCACTGGGACCAGCATGCGCACCGCCACCTCTCACACCTGCTTCTGACCCATGTGGCTGA
CGCCTGGGGTGTGGAGCTGCCCAAGCGTGGCTATCCCCCTGACCCGTGGATTGAGGACTGGGCAGAGATGAATCATCCAT
TCCAGGGAAGCCATAGGCAGACCCCAGACTTCGGGGAGCACCTGGCCTTGCTCCCACCCCCACCTTCTTCTTTGCCTCCT
CCCATGCCTTTTCCCTACCCGCTTCCTCAGCCCTCGCCACCTCCCCTCTTCCCACCCCTGCCCCAGGATACCCCTTTTTT
CCCAGGCCAGCCCTTCCCACCCCATGAATTCTTCAACTATAATCCAGTGGAGGACTTCTCGATGCCACCCCACTTAGGAT
GTGGCCCTGGAGTGAACTTTGTGCCTGGCCCTCTGCCACCTCCAATCCCTGGCCCTAATCCCCATGGTCAGCACTGGGGC
CCAGTGGTCCACCGGGGGATGCCACGCTATGTTCCTAACAGCCCCTACCATGTGCGGAGAATGGGGGGGCCCTGCAGGCA
GCGGCTCAGACACTCAGAGAGACTGATCCACACATACAAACTGGACAGACGGCCTCCTGCCCATTCGGGGACATGGCCTG
GGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 36 .09 RPM
SRP007412_cerebellum 20 .94 RPM
SRP007412_heart 2 .59 RPM
SRP007412_kidney 28 .95 RPM
SRP007412_liver 17 .35 RPM
SRP007412_testis 7 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003863 ortholog_one2one 1 retrogene
retro_btau_182,
Cavia porcellus ENSCPOG00000025475 ortholog_one2one 2 retrogenes
retro_cpor_343, retro_cpor_79,
Equus caballus ENSECAG00000016497 ortholog_one2one 1 retrogene
retro_ecab_87,
Felis catus ENSFCAG00000002886 ortholog_one2one 1 retrogene
retro_fcat_18,
Homo sapiens ENSG00000132635 ortholog_one2one 2 retrogenes
retro_hsap_2207, retro_hsap_82,
Microcebus murinus ENSMICG00000016578 ortholog_one2one 2 retrogenes
retro_mmur_163, retro_mmur_278,
Myotis lucifugus ENSMLUG00000028662 ortholog_one2one 2 retrogenes
retro_mluc_222, retro_mluc_647,
Macaca mulatta ENSMMUG00000005200 ortholog_one2one 2 retrogenes
retro_mmul_333, retro_mmul_341,
Mus musculus ENSMUSG00000037773 ortholog_one2one 2 retrogenes
retro_mmus_1001, retro_mmus_332,
Otolemur garnettii ENSOGAG00000004701 ortholog_one2one 1 retrogene
retro_ogar_81,
Pongo abelii ENSPPYG00000010833 ortholog_one2one 2 retrogenes
retro_pabe_192, retro_pabe_2080,
Pteropus vampyrus ENSPVAG00000006834 ortholog_one2one 1 retrogene
retro_pvam_9,
Sus scrofa ENSSSCG00000007168 ortholog_one2one 1 retrogene
retro_sscr_23,
Ictidomys tridecemlineatus ENSSTOG00000016356 ortholog_one2one 2 retrogenes
retro_itri_1190, retro_itri_783,
Tursiops truncatus ENSTTRG00000003464 ortholog_one2one 1 retrogene
retro_ttru_16,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_105 67.04 59.03
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Download FASTA sequences of all ENSPTRG00000013185 retrocopies