Parental gene:

PCED1A, ENSSSCG00000007168

Aliases:None
Description:PC-esterase domain containing 1A [Source:HGNC Symbol;Acc:16212]
Organism:Pig (Sus scrofa)
Coordinates:17:37196589..37201885(+)


>ENSSSCG00000007168
ATGGTCTTCTGCCTGGAGAACAACGAGCCGCGCCGCCGGCTGCGAAGCACCATGGTCCATTTCCAGGCCTCGGAAGTTCA
GCAGCTACTACACAACAAGTTCGTGGTCATCTTGGGGGACTCAATCCAGCGGGCTGTGTATAAGGACCTAGTGCTCCTGC
TCCAGAAAGACTCACTGCTCACAGCTGCCCAGCTGAAAGCCAAGGGGGAGCTGAGCTTTGAACAGGACCAGCTGGTGGCT
GGAGGTCAGCTGGGCGAACTGCACAATGGGACACAGTACCGGGAGGTCCGCCAGTTCTGCTCGGGTTCTGGTCACCACCT
TGTGCGCTTCTACTTCCTCACCCGTGTTTACTCCGAGTACCTCGAGGGAGTCCTGGAGGAGCTGACCTGTGGGCCTGCCC
CAGACCTAGTGATCATCAATTCCTGCCTCTGGGATCTCTCCAGGTACGGCCGCTGCTCAATGGAGGCCTACCGAGAGAAC
CTGGAGCGGGTGTTCGTGCGCATGGACCAGGTGTTGCCAGACTCCTGCCTGCTGGTGTGGAACATGGCAATGCCCCTAGG
GGAGCGTGTCACTGGGGGTTTCCTTCTGCCCGAGCTCCAGCCCCTGGCGGGCTCTCTGCGGCGAGACGTGGTTGAAGGGA
ATTTCTACAGCGCCACACTGGCTGGGGATCACTGCTTCGATGTCCTGGACCTCCACTTTCATTTCCGACATGCAGTGCGG
CACCGTCATCGGGATGGCATCCACTGGGACCAGCATGCCCACCGCCACCTCTCCCACTTGCTTCTGACCCATGTGGCAGA
TGCCTGGGGTGTGGAGCTGCCCAAGCGTGACTATCCGCCTGACCCATGGACTGAGGACTGGCCAGAGCCGGATCATCTCT
TCCAGGGGAGCCAGGGGCAGCCCCCAGACTTCGGGGAGCAGCTGGCCTTGCCCCCGCCCTCTTCCTTGCCCCCTCCCATG
CCTTTTCCCTCCCCTCTTCCTCAGCCCTCCCCACTTCCTCTGTTTCCACCCCTGCCCCAGGAGCCCCCTTTTTTCCCAGG
CCAGCCCTTCCCACCCCATGAATTCTTCAATTATAATCCAACAGAAGACTTCTCGATGCCACCCCATTTAGGATGTGGCC
CTGGAGTGAACTTTGGGCCTGCCCCCCTGCCTCCACCGGTCGCCAGCTCTGTCCCCCATGGTCAGCACCGGGGCCCTGTG
GTCCACCGGGGGATGCCACGTTGTGTTCACAACAGCCCCTATCATGTGCCGAGGATGGGGGTGCCCTGCCGACAGCGGCT
CAGACACTCAGACAGGCTGATCCACACGTACAAACTGGACAGACGGCCTCCTGCCCATTCGGGGACATGGCCTGGGTAG

Library Parental gene expression (RPM)
SRP014902_placenta 66 .23 RPM
SRP014902_testis 111 .60 RPM
SRP018288_heart 11 .60 RPM
SRP018288_kidney 28 .07 RPM
SRP018288_liver 8 .00 RPM
SRP018288_lung 30 .14 RPM
SRP018856_adipose 56 .10 RPM
SRP035408_brain 42 .05 RPM
SRP035408_liver 5 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003863 ortholog_one2one 1 retrogene
retro_btau_182,
Cavia porcellus ENSCPOG00000025475 ortholog_one2one 2 retrogenes
retro_cpor_343, retro_cpor_79,
Equus caballus ENSECAG00000016497 ortholog_one2one 1 retrogene
retro_ecab_87,
Felis catus ENSFCAG00000002886 ortholog_one2one 1 retrogene
retro_fcat_18,
Homo sapiens ENSG00000132635 ortholog_one2one 2 retrogenes
retro_hsap_2207, retro_hsap_82,
Microcebus murinus ENSMICG00000016578 ortholog_one2one 2 retrogenes
retro_mmur_163, retro_mmur_278,
Myotis lucifugus ENSMLUG00000028662 ortholog_one2one 2 retrogenes
retro_mluc_222, retro_mluc_647,
Macaca mulatta ENSMMUG00000005200 ortholog_one2one 2 retrogenes
retro_mmul_333, retro_mmul_341,
Mus musculus ENSMUSG00000037773 ortholog_one2one 2 retrogenes
retro_mmus_1001, retro_mmus_332,
Otolemur garnettii ENSOGAG00000004701 ortholog_one2one 1 retrogene
retro_ogar_81,
Pongo abelii ENSPPYG00000010833 ortholog_one2one 2 retrogenes
retro_pabe_192, retro_pabe_2080,
Pan troglodytes ENSPTRG00000013185 ortholog_one2one 1 retrogene
retro_ptro_105,
Pteropus vampyrus ENSPVAG00000006834 ortholog_one2one 1 retrogene
retro_pvam_9,
Ictidomys tridecemlineatus ENSSTOG00000016356 ortholog_one2one 2 retrogenes
retro_itri_1190, retro_itri_783,
Tursiops truncatus ENSTTRG00000003464 ortholog_one2one 1 retrogene
retro_ttru_16,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_23 58.16 73.67
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Download FASTA sequences of all ENSSSCG00000007168 retrocopies