RetrogeneDB ID: retro_mluc_647

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429770:14231708..14232518(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FAM113A
• Ensembl ID: ENSMLUG00000028662
• Aliases: None
• Description: None

Sequence

>retro_mluc_647
CAAAGGCCGGAGCCCGGCCGCCCGGCCCGCCGCCACATGGCCCACCTGAGCTCCTGCGAGGTCCGGCAGCTGCTGCACAA
CAAGTTCGTGGTGGTCATGGGGGACTCGGTGCAGCGGGCGGTGTACAAGGACCTGGTGGTCCTGCTGCAGAAGGACGTCC
TGCTGTCCACCAGCCAGCTGAAGACGAAGGGTGAGCTGACCTTCGAGGGGGACGTGCTGCTGGAGGGCGGCCGCTGGGGC
CGCATGCACAATGGCACCCACTACCGCGAGGTGCGCCAGTACCGCGCGGCGCACCACCTGCTGCGCTTCTACTTCCTCAC
GCGCGTGTTCTCGCCCTACGCCGTGGAGGTCCTGGAGGAGCTGCGCGGGGGCCAGCACGCCCCGGACGTGGTGGTCGTCA
ACTCCTGCCTCTGGGACCTGTCGCGGTACGGCCGGGACTTCCGGCGGGGCTACCGCGAGGACCTGGACAGCCTGTTCGGG
CTGCTGGGCCAGGTGCTGCCCGCGTCCTGCCTCCTAGTGTGGAACACGGCCATGCCCGTGGCCGAGGTGGTGTCGGGCGG
CTTCCTGCTGCCGGAGCAGCGGCTCCGGGGCGCCCACCTGCGGCTCGACGTGATGGAGGCCAACTTCTACAGCTCCGTGG
CGGCCGACCGGCACGGCTTCGACGTGCTGGACCTCCATTTCCACTTCCGCCACGCGGGGCAGCACCGGCAGCGGGACGGC
GTGCACTGGGACCAGCGCGCGCACCGCCACCTCTCGCAGCTGCTGCTGGCGCACGTGGCCGACGCCTGGGGGGTGGACCT
GCCCCGCCGC

Alignment

ORF - retro_mluc_647 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.81 %
• Parental protein coverage: 59.96 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ENTEPRRPRRSAMVHLQASEVQQLLHNKFVVILGDSIQRAVYKDLVLLLQKDSLLTAAQLKAKGELSFEQ
          ...EP.RP.R..M.HL...EV.QLLHNKFVV..GDS.QRAVYKDLV.LLQKD.LL...QLK.KGEL.FE.
Retrocopy QRPEPGRPARRHMAHLSSCEVRQLLHNKFVVVMGDSVQRAVYKDLVVLLQKDVLLSTSQLKTKGELTFEG

Parental  DQLVAGGQLGELHNGTQYREVRQFCSGSGHHLVRFYFLTRVYSEYLEGVLEELTYGP-TPDLVIINSCLW
          D.L..GG..G..HNGT.YREVRQ......HHL.RFYFLTRV.S.Y...VLEEL..G...PD.V..NSCLW
Retrocopy DVLLEGGRWGRMHNGTHYREVRQY--RAAHHLLRFYFLTRVFSPYAVEVLEELRGGQHAPDVVVVNSCLW

Parental  DLSRYGRFSMESYRENLERVFMRMDQVLPDSCLLVWNMAMPLGERVTGGFLLPELQPLAASLRRDVVEGN
          DLSRYGR.....YRE.L...F....QVLP.SCLLVWN.AMP..E.V.GGFLLPE.....A.LR.DV.E.N
Retrocopy DLSRYGRDFRRGYREDLDSLFGLLGQVLPASCLLVWNTAMPVAEVVSGGFLLPEQRLRGAHLRLDVMEAN

Parental  FYSATLAGDHCFDVLDLHFHFRHAVRHRHRDGVHWDQHAHRHLSHLLLTHVADAWGVELPKR
          FYS...A..H.FDVLDLHFHFRHA..HR.RDGVHWDQ.AHRHLS.LLL.HVADAWGV.LP.R
Retrocopy FYSSVAADRHGFDVLDLHFHFRHAGQHRQRDGVHWDQRAHRHLSQLLLAHVADAWGVDLPRR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_647 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 16 parental genes, and 24 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000003863	1 retrocopy	retro_btau_182,
Cavia porcellus	ENSCPOG00000025475	2 retrocopies	retro_cpor_343, retro_cpor_79,
Equus caballus	ENSECAG00000016497	1 retrocopy	retro_ecab_87,
Felis catus	ENSFCAG00000002886	1 retrocopy	retro_fcat_18,
Homo sapiens	ENSG00000132635	2 retrocopies	retro_hsap_2207, retro_hsap_82,
Microcebus murinus	ENSMICG00000016578	2 retrocopies	retro_mmur_163, retro_mmur_278,
Myotis lucifugus	ENSMLUG00000028662	2 retrocopies	retro_mluc_222, retro_mluc_647 ,
Macaca mulatta	ENSMMUG00000005200	2 retrocopies	retro_mmul_333, retro_mmul_341,
Mus musculus	ENSMUSG00000037773	2 retrocopies	retro_mmus_1001, retro_mmus_332,
Otolemur garnettii	ENSOGAG00000004701	1 retrocopy	retro_ogar_81,
Pongo abelii	ENSPPYG00000010833	2 retrocopies	retro_pabe_192, retro_pabe_2080,
Pan troglodytes	ENSPTRG00000013185	1 retrocopy	retro_ptro_105,
Pteropus vampyrus	ENSPVAG00000006834	1 retrocopy	retro_pvam_9,
Sus scrofa	ENSSSCG00000007168	1 retrocopy	retro_sscr_23,
Ictidomys tridecemlineatus	ENSSTOG00000016356	2 retrocopies	retro_itri_1190, retro_itri_783,
Tursiops truncatus	ENSTTRG00000003464	1 retrocopy	retro_ttru_16,