Parental gene:

MMU.18817, ENSMMUG00000005200

Aliases:None
Description:protein FAM113A [Source:RefSeq peptide;Acc:NP_001181592]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:10:36143613..36149436(-)


>ENSMMUG00000005200
ATGGTCTTCTGTCTGTCGAGCGAGGAACCGCGCCGCCCGCTGCGAAGCGACATGGTCCACTTCCAGGCCTCGGAAGTCCA
GCAGCTGCTACACAACAAGTTCGTGGTCATCTTGGGGGACTCCATTCAGCGGGCTGTGTACAAGGACCTGGTGCTCTTGC
TCCAGAAAGACTCACTGCTCACAGCTGCCCAGCTGAAAGCCAAGGGGGAGCTGAGCTTTGAACAGGACCAGCTGGTGGCT
GGGGGCCAGCTGGGCGAGCTACACAACGGGACACAGTACCGTGAGGTCCGCCAGTTCTGCTCGGGCTCTGGCCACCACCT
TGTGCGCTTCTACTTCCTCACTCGTGTTTACTCCGAGTACCTTGAGGATGTTCTGGAAGAGCTGACATATGGACCTGCTC
CGGACCTGGTGATCATCAACTCCTGCCTCTGGGATCTCTCCAGATATGGTCGCTGCTCAATGGAGAGCTACCGCAAGAAC
CTGGAGCGGGTGTTTGTGCGCATGGACCAAGTATTGCCAGACTCCTGCCTGCTGGTGTGGAACATGGCGATGCCCCTCGG
GGAGCGTATCACTGGGGGTTTCCTCCTGCCAGAGCTCCAGCCCCTGGCAGGCTCCCTGCGGCGGGATGTGGTTGAAGGGA
ACTTCTACAGTGCTACGCTGGCTGGGGACCACTGCTTTGATGTCCTAGATCTCCACTTTCATTTCCGGCATGCGGTACAG
CACCGTCATCGGGATGGTGTCCACTGGGACCAGCATGCGCACCGCCACCTCTCACACCTGCTTCTGACCCATGTGGCTGA
CGCCTGGGGTGTGGAGCTGCCCAAGCGTGACTATCCCCCTGACCCGTGGATTGAGGACTGGGCAGAGATGAATCATCCAT
TCCAGGGAAGCCATAGGCAGACCCCAGACTTCGGGGAGCACCTGGCCTTGCTCCCACCCCCACCCTCTCCTTTGCCCCCT
CCCATGCCTTTTCCCTACCCACTTCCTCAGCCCTCGCCACCTCCCCTCTTCCCACCCCTGCCCCAGGATACCCCTTTTTT
CCCAGGCCAGCCCTTCCCACCCCATGAATTCTTCAACTATAATCCAGTGGAGGACTTCTCGATGCCACCCCACTTAGGAT
GTGGCCCTCGAGTGAACTTTGTGCCTGGCCCTCTGCCACCTCCAATCCCTGGCCCTAATCCCCATGGTCAGCACTGGGGC
CCAGTGGTCCATCGGGGGATGCCACGCTATGTTCCTAACAGCCCCTACCATGTGCGGAGAATGGGAGGGCCCTGCAGGCA
GCGGCTCAGACACTCAGAGAGACTGATCCACACATACAAACTGGACAGACGGCCTCCTGCCCATTCGGGGACATGGCCTG
GGTAG

Library Parental gene expression (RPM)
SRP007412_brain 12 .77 RPM
SRP007412_brain_prefrontal_cortex 31 .26 RPM
SRP007412_cerebellum 19 .05 RPM
SRP007412_heart 8 .48 RPM
SRP007412_kidney 19 .13 RPM
SRP007412_liver 25 .97 RPM
SRP007412_testis 10 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003863 ortholog_one2one 1 retrogene
retro_btau_182,
Cavia porcellus ENSCPOG00000025475 ortholog_one2one 2 retrogenes
retro_cpor_343, retro_cpor_79,
Equus caballus ENSECAG00000016497 ortholog_one2one 1 retrogene
retro_ecab_87,
Felis catus ENSFCAG00000002886 ortholog_one2one 1 retrogene
retro_fcat_18,
Homo sapiens ENSG00000132635 ortholog_one2one 2 retrogenes
retro_hsap_2207, retro_hsap_82,
Microcebus murinus ENSMICG00000016578 ortholog_one2one 2 retrogenes
retro_mmur_163, retro_mmur_278,
Myotis lucifugus ENSMLUG00000028662 ortholog_one2one 2 retrogenes
retro_mluc_222, retro_mluc_647,
Mus musculus ENSMUSG00000037773 ortholog_one2one 2 retrogenes
retro_mmus_1001, retro_mmus_332,
Otolemur garnettii ENSOGAG00000004701 ortholog_one2one 1 retrogene
retro_ogar_81,
Pongo abelii ENSPPYG00000010833 ortholog_one2one 2 retrogenes
retro_pabe_192, retro_pabe_2080,
Pan troglodytes ENSPTRG00000013185 ortholog_one2one 1 retrogene
retro_ptro_105,
Pteropus vampyrus ENSPVAG00000006834 ortholog_one2one 1 retrogene
retro_pvam_9,
Sus scrofa ENSSSCG00000007168 ortholog_one2one 1 retrogene
retro_sscr_23,
Ictidomys tridecemlineatus ENSSTOG00000016356 ortholog_one2one 2 retrogenes
retro_itri_1190, retro_itri_783,
Tursiops truncatus ENSTTRG00000003464 ortholog_one2one 1 retrogene
retro_ttru_16,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_333 67.04 59.03
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2. retro_mmul_341 61.94 58.81
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Download FASTA sequences of all ENSMMUG00000005200 retrocopies