Parental gene:

APOOL, ENSECAG00000009229

Aliases:None
Description:apolipoprotein O-like [Source:HGNC Symbol;Acc:24009]
Organism:Horse (Equus caballus)
Coordinates:X:64445635..64515935(+)


>ENSECAG00000009229
ATGGCGGCCGTTAGGATGGGAAAGCTGACAACCATGCCTACAGGTCTGATATGTGCATCTATAACCGTGTATGCAGCCAA
AGAAGAGGACTCCAAAAAGCAGCTAGTGAAGCCAGAGCAGCTCCCCATATATACTGCGCCACCTCTCCGATCTAAGTATG
TTAAAGAGCAGCCTGGTAATTTACAAATGAGCTTTGCGTCCATCCGCGCTACAACTGGTCGTTATATTGGCTGGTGCAAG
GGTGTTTATGACTTTGTGAAAAATGGGATAATGGATACAGTACAATTTGGAAAAGATGCCTATATCTATCTGAAGAATCC
ACCTCGAGATTTTCTTCCGAAAGTTGGAGTCATTACAGTCTCAGGGTTGGCAGGCTTGGTTTCAGCGAGAAAAGGTTCTA
GGTTTAAGAAAATTGCTTATCCACTGGGGCTGGCCACTTTAGGAGCATCTGTTTGCTACCCAGTTCAGTCAGTAATAATT
GCAAAGGTAACTGGGAGAAAGGCATATGCTACAAGCCAGCAAATTTATGAAGCAGTTAAATCATTGTGGACAAAAAACAA
CAAAAAAGAGTCACTTCCTGAACCTAAAGAAAAAACTAAGCTAGGAAGCCCTGCTGAAATAGAAATACCTGCAAAAACGC
CTCACGACCTGAAACACTCAGTGCCTTTGCCAACAGAATTCAGCTCTGAAACGAAGACCAAATTGGAATCCCCCTCAGGT
GCTACACAGTTTCTGCCTGACCCCAAGCTCATGGATCACGGGCAGTCCCATCCAGAAGATGCAGATATGTACAGCACTAG
AAGCTGA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 3 .07 RPM
SRP021940_cerebellum 2 .49 RPM
SRP021940_embryo 9 .64 RPM
SRP021940_placental_villous 13 .23 RPM
SRP021940_synovial_membrane 5 .11 RPM
SRP021940_testis 1 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000829 ortholog_one2one 1 retrogene
retro_amel_1035,
Canis familiaris ENSCAFG00000017383 ortholog_one2one 1 retrogene
retro_cfam_1490,
Callithrix jacchus ENSCJAG00000008249 ortholog_one2one 2 retrogenes
retro_cjac_1783, retro_cjac_2464,
Dipodomys ordii ENSDORG00000011045 ortholog_one2one 1 retrogene
retro_dord_373,
Equus caballus ENSECAG00000013441 within_species_paralog 1 retrogene
retro_ecab_145,
Homo sapiens ENSG00000155008 ortholog_one2one 1 retrogene
retro_hsap_3253,
Gorilla gorilla ENSGGOG00000016329 ortholog_one2one 1 retrogene
retro_ggor_2213,
Loxodonta africana ENSLAFG00000008844 ortholog_one2one 1 retrogene
retro_lafr_1035,
Microcebus murinus ENSMICG00000015844 ortholog_one2one 1 retrogene
retro_mmur_1511,
Myotis lucifugus ENSMLUG00000011384 ortholog_one2one 1 retrogene
retro_mluc_1364,
Macaca mulatta ENSMMUG00000004335 ortholog_one2one 1 retrogene
retro_mmul_2045,
Mustela putorius furo ENSMPUG00000001899 possible_ortholog 3 retrogenes
retro_mputfur_606, retro_mputfur_734, retro_mputfur_874,
Nomascus leucogenys ENSNLEG00000002634 ortholog_one2one 1 retrogene
retro_nleu_1702,
Pongo abelii ENSPPYG00000020516 ortholog_one2one 1 retrogene
retro_pabe_2697,
Pan troglodytes ENSPTRG00000022067 ortholog_one2one 1 retrogene
retro_ptro_2200,
Sus scrofa ENSSSCG00000012459 ortholog_one2many 1 retrogene
retro_sscr_610,
Tursiops truncatus ENSTTRG00000000429 ortholog_one2one 1 retrogene
retro_ttru_1337,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_577 83.81 77.99
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Download FASTA sequences of all ENSECAG00000009229 retrocopies