RetrogeneDB ID: | retro_amel_1035 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192849.1:1197667..1198118(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | APOOL | ||
Ensembl ID: | ENSAMEG00000000829 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.03 % |
Parental protein coverage: | 57.58 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VITVSGLAGLVSARKGSRFKKIAYPLGLATLGATVCYPVQSVIIAKVTGKKAYTTSQQIYEAVKSLWTKM |
V...SG....V...KGSR..K.AYPLGLAT.GATVCYPVQSVIIAKVTGKKAYTTSQQI.EAVKSL.TK. | |
Retrocopy | VFEKSGIMDTVQSGKGSRINKMAYPLGLATVGATVCYPVQSVIIAKVTGKKAYTTSQQI*EAVKSLQTKI |
Parental | NKKESFPKPKEK-SKLGNSAEIEIPAKTTDSLKHSVPLPTELSSETKTKSESTSGATQFMPDPKLMDYGQ |
.K...F...K.K..KLGNSAEIEIP.KTTDSLK.SVPLP.ELSSETKTKSES.SGAT.FMPDPK.MD..Q | |
Retrocopy | SKSH-FLNLKKK<AKLGNSAEIEIPVKTTDSLKYSVPLPIELSSETKTKSESPSGAT*FMPDPKPMDHSQ |
Parental | SHPEDID-MYSTRS |
SHPE.....YSTRS | |
Retrocopy | SHPEYVE<VYSTRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000829 | 1 retrocopy |
retro_amel_1035 ,
|
Ailuropoda melanoleuca | ENSAMEG00000012749 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000017383 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000008249 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000011045 | 1 retrocopy | |
Equus caballus | ENSECAG00000009229 | 1 retrocopy | |
Homo sapiens | ENSG00000155008 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016329 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008844 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000015844 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011384 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004335 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000001899 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000002634 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020516 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022067 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012459 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000429 | 1 retrocopy |