RetrogeneDB ID: retro_mluc_1364

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429827:3170818..3171606(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: APOOL
• Ensembl ID: ENSMLUG00000011384
• Aliases: None
• Description: None

Sequence

>retro_mluc_1364
ATGGGAAAGCTGACAAGCGCGCCTGCAGGTCTGATATGTGCATCTATAAGTGTGCACGCAGCCAAAGAAAAGAAATTCAT
ACAGCCGCTAATGAGACCAGAGAAGCTCCCCAAATATACTTCACCGCCTCTCCAGTCTAAAGATGCTGAAGAGCAGCCTG
GAAATTTACAAATGGGCTTTGCCTCCATCCGCACTACAACTGGTTGTTATATTGGCCGGTGCAAGCATGTTTATGTCTTT
GTGAAATATGGGATAATAGAGACAGTTCAATTTGGAAAAGATGCATATGTTTATCTGAAGATTCCACCATGAGATTTTCT
TCTGGAAATTGCAGTGATTACAGTTTCAGGATTGGTAGGCTTGGTTTCAGCAAGAAAAGGTTCTAGATTTAAGAAAATAG
CTTATCCATCAGGACTGGCCACTTAAGTAACAGCTGTTTGTTACCCAGTTGAGTCCGTAATAATTGCAAAGGTAACCTGG
AAAAGGGCATATGGTATGTGCCAGCAAATTTATGAAGCAGTTAAATCATTGTACACACAAAAACAACAAAAAAGTCACTT
CCTGAATCTAAAGGAAAAACTAAGCTGGGAAGTTATGCTGAAACAGAAATACCTGTAAAAACAGCTCACTACCTGAAATA
TTCAATGGCTTTGTCAACAGAACTAAGATCTGAAACGAAGACCAAATCAGAGTCCACCTCAGGTGCTACGCAGTTTATGC
CTGACCCCAAGCTCATGGATCACAGGCAGTCCCATCCAGAAGATGTAGATATGTACAGCACTAGAAGC

Alignment

ORF - retro_mluc_1364 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.0 %
• Parental protein coverage: 98.13 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MRKLTIMPAGLIFASISVHAAKEEESKKQLMKPEQLPIYASPPLQSKYVEEQPGNLQMGFASIRTTTGRY
          M.KLT..PAGLI.ASISVHAAKE......LM.PE.LP.Y.SPPLQSK..EEQPGNLQMGFASIRTTTG.Y
Retrocopy MGKLTSAPAGLICASISVHAAKEKKFIQPLMRPEKLPKYTSPPLQSKDAEEQPGNLQMGFASIRTTTGCY

Parental  IGWCKGVYVFVKNGIMDTVQFGKDAYVYLKDPPRDFLPKMGVITVSGLAGLVSARKGSRFKKIAYPLGLA
          IG.CK.VYVFVK.GI..TVQFGKDAYVYLK.PP.DFL....VITVSGL.GLVSARKGSRFKKIAYP.GLA
Retrocopy IGRCKHVYVFVKYGIIETVQFGKDAYVYLKIPP*DFLLEIAVITVSGLVGLVSARKGSRFKKIAYPSGLA

Parental  TLGATVCYPVQSVIIAKVTGKKAYATSQKMYEAVKSLWTKDNK-KESLPEPKEKIKPENSAETEIPAKTA
          T....VCYPV.SVIIAKVT.K.AY...Q..YEAVKSL.T.....K.SLPE.K.K.K....AETEIP.KTA
Retrocopy T*VTAVCYPVESVIIAKVTWKRAYGMCQQIYEAVKSLYTQKQQ<KKSLPESKGKTKLGSYAETEIPVKTA

Parental  HDPKHSVGLPTELRSEMKTKSEFTSGATQFMPDPKLMDHGQSHPEDVDMYSTRS
          H..K.S..L.TELRSE.KTKSE.TSGATQFMPDPKLMDH.QSHPEDVDMYSTRS
Retrocopy HYLKYSMALSTELRSETKTKSESTSGATQFMPDPKLMDHRQSHPEDVDMYSTRS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1364 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 17 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000000829	1 retrocopy	retro_amel_1035,
Canis familiaris	ENSCAFG00000017383	1 retrocopy	retro_cfam_1490,
Callithrix jacchus	ENSCJAG00000008249	2 retrocopies	retro_cjac_1783, retro_cjac_2464,
Dipodomys ordii	ENSDORG00000011045	1 retrocopy	retro_dord_373,
Equus caballus	ENSECAG00000009229	1 retrocopy	retro_ecab_577,
Homo sapiens	ENSG00000155008	1 retrocopy	retro_hsap_3253,
Gorilla gorilla	ENSGGOG00000016329	1 retrocopy	retro_ggor_2213,
Loxodonta africana	ENSLAFG00000008844	1 retrocopy	retro_lafr_1035,
Microcebus murinus	ENSMICG00000015844	1 retrocopy	retro_mmur_1511,
Myotis lucifugus	ENSMLUG00000011384	1 retrocopy	retro_mluc_1364 ,
Macaca mulatta	ENSMMUG00000004335	1 retrocopy	retro_mmul_2045,
Mustela putorius furo	ENSMPUG00000001899	3 retrocopies	retro_mputfur_606, retro_mputfur_734, retro_mputfur_874,
Nomascus leucogenys	ENSNLEG00000002634	1 retrocopy	retro_nleu_1702,
Pongo abelii	ENSPPYG00000020516	1 retrocopy	retro_pabe_2697,
Pan troglodytes	ENSPTRG00000022067	1 retrocopy	retro_ptro_2200,
Sus scrofa	ENSSSCG00000012459	1 retrocopy	retro_sscr_610,
Tursiops truncatus	ENSTTRG00000000429	1 retrocopy	retro_ttru_1337,