Parental gene:

ENSECAG00000015816

Aliases:None
Description:None
Organism:Horse (Equus caballus)
Coordinates:8:13874905..13877161(+)


>ENSECAG00000015816
ATGCTGAACATCTCCCCCTTCTCCTTTGGGCTGATCATCCAGCAGGTCTTTGACAATGGCAGCATCTACAACCCGGAAGT
GCTTGACATCACAGAGGAAACTCTGCATTCTCGCTTCCTGGAGGGTGTCCGCAATGTTGCCAGTGTGTGTCTGCAGATTG
GTTACCCCACTGTTGCATCAGTACCCCATTCTATCATCAATGGGTACAAGCGGGTCCTGGCTTTGTCTGTGGAGACTGAT
TACACCTTCCCACTTGCTGAAAAGGTCAAGGCCTTCTTGGCTGATCCATCTGCATTTGTGGCTGCTGCCCCCGTGGCCGC
TGCCACCACTGCTGCTCCTGCTGCTGCCGCAGCCCCAGCCAAGGTTGAAGCAAAGGAAGAGTCGGAGGAGTCGGACGAGG
ATATGGGATTTGGTCTCTTTGACTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 1580 .66 RPM
SRP021940_embryo 1287 .74 RPM
SRP021940_cerebellum 505 .56 RPM
SRP021940_testis 753 .44 RPM
SRP021940_placental_villous 862 .44 RPM
SRP021940_articular_cartilage 2549 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003756 possible_ortholog 2 retrogenes
retro_acar_111, retro_acar_115,
Choloepus hoffmanni ENSCHOG00000002745 ortholog_one2many 2 retrogenes
retro_chof_1115, retro_chof_2341,
Callithrix jacchus ENSCJAG00000008677 possible_ortholog 3 retrogenes
retro_cjac_1693, retro_cjac_2840, retro_cjac_786,
Homo sapiens ENSG00000089157 possible_ortholog 7 retrogenes
retro_hsap_1403, retro_hsap_1553, retro_hsap_1889, retro_hsap_2095, retro_hsap_2334, retro_hsap_512, retro_hsap_784,
Gorilla gorilla ENSGGOG00000026582 possible_ortholog 5 retrogenes
retro_ggor_1088, retro_ggor_1771, retro_ggor_472, retro_ggor_649, retro_ggor_650,
Macropus eugenii ENSMEUG00000016409 possible_ortholog 12 retrogenes
retro_meug_1211, retro_meug_1245, retro_meug_1339, retro_meug_1410, retro_meug_1672, retro_meug_1689, retro_meug_1789, retro_meug_1800, retro_meug_1943, retro_meug_2166, retro_meug_294, retro_meug_772,
Macaca mulatta ENSMMUG00000009157 possible_ortholog 2 retrogenes
retro_mmul_2245, retro_mmul_939,
Otolemur garnettii ENSOGAG00000003843 possible_ortholog 4 retrogenes
retro_ogar_2184, retro_ogar_2294, retro_ogar_556, retro_ogar_713,
Procavia capensis ENSPCAG00000016429 possible_ortholog 6 retrogenes
retro_pcap_232, retro_pcap_314, retro_pcap_339, retro_pcap_353, retro_pcap_408, retro_pcap_67,
Petromyzon marinus ENSPMAG00000001339 ortholog_many2many 1 retrogene
retro_pmar_6,
Pongo abelii ENSPPYG00000005022 possible_ortholog 5 retrogenes
retro_pabe_2113, retro_pabe_3035, retro_pabe_568, retro_pabe_66, retro_pabe_749,
Sarcophilus harrisii ENSSHAG00000001623 possible_ortholog 2 retrogenes
retro_shar_286, retro_shar_413,
Tursiops truncatus ENSTTRG00000005658 possible_ortholog 1 retrogene
retro_ttru_965,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_585 68.57 98.58
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2. retro_ecab_1090 70.64 75.89
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Download FASTA sequences of all ENSECAG00000015816 retrocopies