RetrogeneDB ID: | retro_mmul_939 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 12:20381237..20381905(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000018964 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSMMUG00000009157 | ||
Aliases: | None | ||
Description: | acidic ribosomal phosphoprotein PO [Source:RefSeq peptide;Acc:NP_001182357] |
Percent Identity: | 70.74 % |
Parental protein coverage: | 70.44 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | REDRATWKSNYFLKIIQLLDDYPKCFIV-GADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN |
R.D..TWKSN.FLK..QLLDDYPKC.IV.G.DNVGSKQ.Q...M...GK.V.LM.KNT...KAI.GH.EN | |
Retrocopy | RQDKTTWKSNHFLKSNQLLDDYPKCLIV<GSDNVGSKQIQ-VGMYF*GKSVELMDKNTITHKAI*GHPEN |
Parental | NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANK-VPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQA |
N.ALEKLLPHI.GN.GFV.TKED.TEIRD.LLAN..VP....AGAIAP.EVTVPAQNT.LGP.K..FFQA | |
Retrocopy | NSALEKLLPHI*GNMGFVLTKEDFTEIRDILLANR<VPVHVCAGAIAPREVTVPAQNTSLGPKKSFFFQA |
Parental | LGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISP-FSFGLV-IQQVFDNGSIYN-PEVLDIT |
LGITTKISR.TIEILSDVQLI.TGDKV.AS.ATL.NMLN....FSFGL..I..VFDN.SIYN.P...... | |
Retrocopy | LGITTKISRVTIEILSDVQLIRTGDKVEASKATLQNMLNTAHLFSFGLI<IKKVFDNSSIYN<PLKSLTS |
Parental | EETLHSRFLEGVRNVASVC |
...LHS.FLEGV.NVASVC | |
Retrocopy | QRKLHSHFLEGVHNVASVC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 94 .01 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 185 .08 RPM |
SRP007412_cerebellum | 0 .00 RPM | 103 .13 RPM |
SRP007412_heart | 0 .00 RPM | 236 .07 RPM |
SRP007412_kidney | 0 .00 RPM | 348 .82 RPM |
SRP007412_liver | 0 .00 RPM | 716 .47 RPM |
SRP007412_testis | 0 .00 RPM | 154 .35 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2334 |
Gorilla gorilla | retro_ggor_1771 |
Pongo abelii | retro_pabe_2113 |